Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1123 and GFF1124 are separated by 46 nucleotides GFF1124 and GFF1125 are separated by 547 nucleotides
GFF1123 - Probable NreB protein, at 53,093 to 54,418
GFF1123
GFF1124 - NreA-like protein, at 54,465 to 54,743
GFF1124
GFF1125 - putative ORF1 [Plasmid pTOM9], at 55,291 to 56,028
GFF1125
Position (kb) 54
55 Strain fitness (log2 ratio) -1
0
1 at 53.473 kb on - strand, within GFF1123 at 53.555 kb on + strand, within GFF1123 at 53.556 kb on - strand, within GFF1123 at 53.823 kb on + strand, within GFF1123 at 53.830 kb on + strand, within GFF1123 at 53.830 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.115 kb on - strand, within GFF1123 at 54.115 kb on - strand, within GFF1123 at 54.115 kb on - strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.247 kb on - strand, within GFF1123 at 54.466 kb on + strand at 54.536 kb on + strand, within GFF1124 at 54.536 kb on + strand, within GFF1124 at 54.537 kb on - strand, within GFF1124 at 54.537 kb on - strand, within GFF1124 at 54.537 kb on - strand, within GFF1124 at 54.773 kb on + strand at 54.773 kb on + strand at 55.106 kb on + strand at 55.106 kb on + strand at 55.107 kb on - strand at 55.107 kb on - strand at 55.107 kb on - strand at 55.107 kb on - strand at 55.355 kb on + strand at 55.392 kb on + strand, within GFF1125 at 55.439 kb on - strand, within GFF1125 at 55.651 kb on + strand, within GFF1125 at 55.688 kb on - strand, within GFF1125
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 53,473 - GFF1123 0.29 -0.1 53,555 + GFF1123 0.35 +0.4 53,556 - GFF1123 0.35 -0.1 53,823 + GFF1123 0.55 -0.9 53,830 + GFF1123 0.56 -0.8 53,830 + GFF1123 0.56 -0.2 54,114 + GFF1123 0.77 -0.4 54,114 + GFF1123 0.77 +0.1 54,114 + GFF1123 0.77 +1.1 54,114 + GFF1123 0.77 -0.0 54,114 + GFF1123 0.77 +0.7 54,114 + GFF1123 0.77 +0.8 54,115 - GFF1123 0.77 +0.0 54,115 - GFF1123 0.77 +0.9 54,115 - GFF1123 0.77 -0.5 54,246 + GFF1123 0.87 -0.0 54,246 + GFF1123 0.87 -0.0 54,246 + GFF1123 0.87 +0.4 54,246 + GFF1123 0.87 +0.9 54,246 + GFF1123 0.87 -0.5 54,247 - GFF1123 0.87 +0.4 54,466 + -0.1 54,536 + GFF1124 0.25 +0.6 54,536 + GFF1124 0.25 -0.0 54,537 - GFF1124 0.26 -0.1 54,537 - GFF1124 0.26 +0.7 54,537 - GFF1124 0.26 +0.4 54,773 + -0.9 54,773 + +0.2 55,106 + +0.1 55,106 + +0.3 55,107 - +1.0 55,107 - -0.1 55,107 - -0.6 55,107 - +0.9 55,355 + +0.9 55,392 + GFF1125 0.14 +0.1 55,439 - GFF1125 0.20 +0.1 55,651 + GFF1125 0.49 -0.5 55,688 - GFF1125 0.54 +0.1
Or see this region's nucleotide sequence