Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1044 and GFF1045 are separated by 19 nucleotides GFF1045 and GFF1046 overlap by 11 nucleotides GFF1046 and GFF1047 are separated by 457 nucleotides GFF1047 and GFF1048 are separated by 67 nucleotides
GFF1044 - Copper-containing nitrite reductase (EC 1.7.2.1), at 782,856 to 783,473
GFF1044
GFF1045 - Cytochrome c oxidase subunit CcoO (EC 1.9.3.1), at 783,493 to 784,083
GFF1045
GFF1046 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 784,073 to 785,716
GFF1046
GFF1047 - Truncated hemoglobins, at 786,174 to 786,575
GFF1047
GFF1048 - NnrS protein involved in response to NO, at 786,643 to 787,815
GFF1048
Position (kb) 784
785
786 Strain fitness (log2 ratio) -2
-1
0
1 at 783.097 kb on - strand, within GFF1044 at 783.097 kb on - strand, within GFF1044 at 783.214 kb on + strand, within GFF1044 at 783.214 kb on + strand, within GFF1044 at 783.340 kb on + strand, within GFF1044 at 783.341 kb on - strand, within GFF1044 at 783.341 kb on - strand, within GFF1044 at 783.341 kb on - strand, within GFF1044 at 783.548 kb on + strand at 783.548 kb on + strand at 783.549 kb on - strand at 783.549 kb on - strand at 783.549 kb on - strand at 783.549 kb on - strand at 783.668 kb on + strand, within GFF1045 at 783.702 kb on - strand, within GFF1045 at 783.702 kb on - strand, within GFF1045 at 783.717 kb on - strand, within GFF1045 at 783.815 kb on + strand, within GFF1045 at 783.816 kb on - strand, within GFF1045 at 783.816 kb on - strand, within GFF1045 at 783.816 kb on - strand, within GFF1045 at 783.821 kb on + strand, within GFF1045 at 783.822 kb on - strand, within GFF1045 at 783.822 kb on - strand, within GFF1045 at 783.822 kb on - strand, within GFF1045 at 783.926 kb on + strand, within GFF1045 at 783.926 kb on + strand, within GFF1045 at 783.926 kb on + strand, within GFF1045 at 783.926 kb on + strand, within GFF1045 at 783.927 kb on - strand, within GFF1045 at 784.005 kb on - strand, within GFF1045 at 784.005 kb on - strand, within GFF1045 at 784.321 kb on - strand, within GFF1046 at 784.321 kb on - strand, within GFF1046 at 784.324 kb on + strand, within GFF1046 at 784.413 kb on + strand, within GFF1046 at 784.449 kb on + strand, within GFF1046 at 784.449 kb on + strand, within GFF1046 at 784.458 kb on - strand, within GFF1046 at 784.551 kb on + strand, within GFF1046 at 784.552 kb on - strand, within GFF1046 at 784.594 kb on - strand, within GFF1046 at 784.791 kb on + strand, within GFF1046 at 784.791 kb on + strand, within GFF1046 at 784.792 kb on - strand, within GFF1046 at 784.830 kb on + strand, within GFF1046 at 784.833 kb on + strand, within GFF1046 at 784.833 kb on + strand, within GFF1046 at 784.834 kb on - strand, within GFF1046 at 784.887 kb on + strand, within GFF1046 at 784.920 kb on - strand, within GFF1046 at 785.001 kb on + strand, within GFF1046 at 785.001 kb on + strand, within GFF1046 at 785.001 kb on + strand, within GFF1046 at 785.002 kb on - strand, within GFF1046 at 785.002 kb on - strand, within GFF1046 at 785.035 kb on - strand, within GFF1046 at 785.277 kb on + strand, within GFF1046 at 785.278 kb on - strand, within GFF1046 at 785.364 kb on + strand, within GFF1046 at 785.622 kb on - strand at 785.905 kb on - strand at 785.921 kb on - strand at 786.028 kb on + strand at 786.228 kb on + strand, within GFF1047 at 786.228 kb on + strand, within GFF1047 at 786.256 kb on + strand, within GFF1047 at 786.256 kb on + strand, within GFF1047 at 786.256 kb on + strand, within GFF1047 at 786.257 kb on - strand, within GFF1047
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 783,097 - GFF1044 0.39 -0.4 783,097 - GFF1044 0.39 -0.8 783,214 + GFF1044 0.58 -0.0 783,214 + GFF1044 0.58 +0.1 783,340 + GFF1044 0.78 -0.1 783,341 - GFF1044 0.78 +0.3 783,341 - GFF1044 0.78 -0.4 783,341 - GFF1044 0.78 +0.1 783,548 + +0.4 783,548 + -0.1 783,549 - +0.7 783,549 - +0.3 783,549 - -1.9 783,549 - -1.2 783,668 + GFF1045 0.30 +0.1 783,702 - GFF1045 0.35 +0.1 783,702 - GFF1045 0.35 +0.4 783,717 - GFF1045 0.38 +0.4 783,815 + GFF1045 0.54 +0.0 783,816 - GFF1045 0.55 +0.2 783,816 - GFF1045 0.55 -0.3 783,816 - GFF1045 0.55 -0.0 783,821 + GFF1045 0.55 +0.2 783,822 - GFF1045 0.56 -0.2 783,822 - GFF1045 0.56 -0.5 783,822 - GFF1045 0.56 -0.1 783,926 + GFF1045 0.73 -0.2 783,926 + GFF1045 0.73 +0.6 783,926 + GFF1045 0.73 -0.9 783,926 + GFF1045 0.73 +0.0 783,927 - GFF1045 0.73 -0.1 784,005 - GFF1045 0.87 -1.0 784,005 - GFF1045 0.87 +0.2 784,321 - GFF1046 0.15 +0.0 784,321 - GFF1046 0.15 +0.6 784,324 + GFF1046 0.15 -0.0 784,413 + GFF1046 0.21 +0.8 784,449 + GFF1046 0.23 -2.5 784,449 + GFF1046 0.23 +0.7 784,458 - GFF1046 0.23 -0.3 784,551 + GFF1046 0.29 -1.1 784,552 - GFF1046 0.29 -0.3 784,594 - GFF1046 0.32 -1.1 784,791 + GFF1046 0.44 +0.3 784,791 + GFF1046 0.44 -0.3 784,792 - GFF1046 0.44 +1.1 784,830 + GFF1046 0.46 -1.2 784,833 + GFF1046 0.46 -0.8 784,833 + GFF1046 0.46 -0.3 784,834 - GFF1046 0.46 -1.5 784,887 + GFF1046 0.50 +0.3 784,920 - GFF1046 0.52 +0.1 785,001 + GFF1046 0.56 -1.9 785,001 + GFF1046 0.56 +0.2 785,001 + GFF1046 0.56 -0.2 785,002 - GFF1046 0.57 -0.9 785,002 - GFF1046 0.57 +0.3 785,035 - GFF1046 0.59 +0.2 785,277 + GFF1046 0.73 -1.1 785,278 - GFF1046 0.73 +0.1 785,364 + GFF1046 0.79 +0.1 785,622 - +0.2 785,905 - -0.2 785,921 - -0.3 786,028 + -0.7 786,228 + GFF1047 0.13 -0.1 786,228 + GFF1047 0.13 +0.7 786,256 + GFF1047 0.20 -0.3 786,256 + GFF1047 0.20 +0.8 786,256 + GFF1047 0.20 +0.1 786,257 - GFF1047 0.21 -1.8
Or see this region's nucleotide sequence