Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1042 and GFF1043 overlap by 4 nucleotides GFF1043 and GFF1044 overlap by 4 nucleotides GFF1044 and GFF1045 are separated by 19 nucleotides
GFF1042 - hypothetical cytochrome oxidase associated membrane protein, at 781,562 to 782,179
GFF1042
GFF1043 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 782,176 to 782,859
GFF1043
GFF1044 - Copper-containing nitrite reductase (EC 1.7.2.1), at 782,856 to 783,473
GFF1044
GFF1045 - Cytochrome c oxidase subunit CcoO (EC 1.9.3.1), at 783,493 to 784,083
GFF1045
Position (kb) 782
783 Strain fitness (log2 ratio) -2
-1
0
1 at 781.314 kb on - strand at 781.328 kb on - strand at 781.563 kb on + strand at 781.765 kb on + strand, within GFF1042 at 781.765 kb on + strand, within GFF1042 at 781.765 kb on + strand, within GFF1042 at 781.765 kb on + strand, within GFF1042 at 781.766 kb on - strand, within GFF1042 at 781.766 kb on - strand, within GFF1042 at 781.766 kb on - strand, within GFF1042 at 782.065 kb on + strand, within GFF1042 at 782.066 kb on - strand, within GFF1042 at 782.066 kb on - strand, within GFF1042 at 782.265 kb on - strand, within GFF1043 at 782.624 kb on + strand, within GFF1043 at 783.052 kb on + strand, within GFF1044 at 783.052 kb on + strand, within GFF1044 at 783.052 kb on + strand, within GFF1044 at 783.097 kb on - strand, within GFF1044 at 783.097 kb on - strand, within GFF1044 at 783.214 kb on + strand, within GFF1044 at 783.214 kb on + strand, within GFF1044 at 783.340 kb on + strand, within GFF1044 at 783.341 kb on - strand, within GFF1044 at 783.341 kb on - strand, within GFF1044 at 783.341 kb on - strand, within GFF1044 at 783.548 kb on + strand at 783.548 kb on + strand at 783.549 kb on - strand at 783.549 kb on - strand at 783.549 kb on - strand at 783.549 kb on - strand at 783.668 kb on + strand, within GFF1045 at 783.702 kb on - strand, within GFF1045 at 783.702 kb on - strand, within GFF1045 at 783.717 kb on - strand, within GFF1045 at 783.815 kb on + strand, within GFF1045 at 783.816 kb on - strand, within GFF1045 at 783.816 kb on - strand, within GFF1045 at 783.816 kb on - strand, within GFF1045 at 783.821 kb on + strand, within GFF1045 at 783.822 kb on - strand, within GFF1045 at 783.822 kb on - strand, within GFF1045 at 783.822 kb on - strand, within GFF1045
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 781,314 - -0.1 781,328 - -1.9 781,563 + -2.0 781,765 + GFF1042 0.33 -0.5 781,765 + GFF1042 0.33 +0.2 781,765 + GFF1042 0.33 -0.3 781,765 + GFF1042 0.33 +0.4 781,766 - GFF1042 0.33 +0.4 781,766 - GFF1042 0.33 -0.0 781,766 - GFF1042 0.33 +0.2 782,065 + GFF1042 0.81 +0.1 782,066 - GFF1042 0.82 -0.1 782,066 - GFF1042 0.82 +0.0 782,265 - GFF1043 0.13 +1.5 782,624 + GFF1043 0.65 -0.1 783,052 + GFF1044 0.32 +0.7 783,052 + GFF1044 0.32 +0.2 783,052 + GFF1044 0.32 -0.9 783,097 - GFF1044 0.39 -0.4 783,097 - GFF1044 0.39 -0.8 783,214 + GFF1044 0.58 -0.0 783,214 + GFF1044 0.58 +0.1 783,340 + GFF1044 0.78 -0.1 783,341 - GFF1044 0.78 +0.3 783,341 - GFF1044 0.78 -0.4 783,341 - GFF1044 0.78 +0.1 783,548 + +0.4 783,548 + -0.1 783,549 - +0.7 783,549 - +0.3 783,549 - -1.9 783,549 - -1.2 783,668 + GFF1045 0.30 +0.1 783,702 - GFF1045 0.35 +0.1 783,702 - GFF1045 0.35 +0.4 783,717 - GFF1045 0.38 +0.4 783,815 + GFF1045 0.54 +0.0 783,816 - GFF1045 0.55 +0.2 783,816 - GFF1045 0.55 -0.3 783,816 - GFF1045 0.55 -0.0 783,821 + GFF1045 0.55 +0.2 783,822 - GFF1045 0.56 -0.2 783,822 - GFF1045 0.56 -0.5 783,822 - GFF1045 0.56 -0.1
Or see this region's nucleotide sequence