Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1010 and GFF1011 are separated by 215 nucleotides GFF1011 and GFF1012 are separated by 36 nucleotides GFF1012 and GFF1013 overlap by 1 nucleotides GFF1013 and GFF1014 overlap by 4 nucleotides
GFF1010 - Rieske (2Fe-2S) region, at 748,402 to 749,676
GFF1010
GFF1011 - Transcriptional regulator, IclR family, at 749,892 to 750,578
GFF1011
GFF1012 - Benzoate transport, ATP binding protein, at 750,615 to 751,337
GFF1012
GFF1013 - Benzoate transport, ATPase component, at 751,337 to 752,098
GFF1013
GFF1014 - Benzoate transport, inner-membrane translocator precursor, at 752,095 to 753,087
GFF1014
Position (kb) 750
751
752 Strain fitness (log2 ratio) -2
-1
0
1 at 749.676 kb on + strand at 749.677 kb on - strand at 749.797 kb on - strand at 749.804 kb on + strand at 749.805 kb on - strand at 749.805 kb on - strand at 749.805 kb on - strand at 749.805 kb on - strand at 749.828 kb on + strand at 749.829 kb on - strand at 749.829 kb on - strand at 749.831 kb on - strand at 749.970 kb on + strand, within GFF1011 at 749.971 kb on - strand, within GFF1011 at 749.971 kb on - strand, within GFF1011 at 749.971 kb on - strand, within GFF1011 at 749.971 kb on - strand, within GFF1011 at 749.971 kb on - strand, within GFF1011 at 750.040 kb on + strand, within GFF1011 at 750.040 kb on + strand, within GFF1011 at 750.041 kb on - strand, within GFF1011 at 750.091 kb on + strand, within GFF1011 at 750.091 kb on + strand, within GFF1011 at 750.092 kb on - strand, within GFF1011 at 750.092 kb on - strand, within GFF1011 at 750.092 kb on - strand, within GFF1011 at 750.092 kb on - strand, within GFF1011 at 750.092 kb on - strand, within GFF1011 at 750.092 kb on - strand, within GFF1011 at 750.238 kb on - strand, within GFF1011 at 750.307 kb on - strand, within GFF1011 at 750.337 kb on + strand, within GFF1011 at 750.337 kb on + strand, within GFF1011 at 750.337 kb on + strand, within GFF1011 at 750.338 kb on - strand, within GFF1011 at 750.338 kb on - strand, within GFF1011 at 750.345 kb on + strand, within GFF1011 at 750.345 kb on + strand, within GFF1011 at 750.345 kb on + strand, within GFF1011 at 750.381 kb on + strand, within GFF1011 at 750.382 kb on - strand, within GFF1011 at 750.382 kb on - strand, within GFF1011 at 750.382 kb on - strand, within GFF1011 at 750.388 kb on + strand, within GFF1011 at 750.517 kb on + strand at 750.517 kb on + strand at 750.517 kb on + strand at 750.517 kb on + strand at 750.518 kb on - strand at 750.518 kb on - strand at 750.518 kb on - strand at 750.524 kb on + strand at 750.524 kb on + strand at 750.525 kb on - strand at 750.576 kb on + strand at 750.577 kb on - strand at 750.577 kb on - strand at 750.577 kb on - strand at 750.580 kb on + strand at 750.618 kb on + strand at 750.618 kb on + strand at 750.619 kb on - strand at 750.619 kb on - strand at 750.619 kb on - strand at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.980 kb on - strand, within GFF1012 at 750.980 kb on - strand, within GFF1012 at 750.980 kb on - strand, within GFF1012 at 751.078 kb on + strand, within GFF1012 at 751.356 kb on + strand at 751.356 kb on + strand at 751.356 kb on + strand at 751.357 kb on - strand at 752.235 kb on - strand, within GFF1014
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 749,676 + -0.7 749,677 - -0.3 749,797 - +0.3 749,804 + +1.1 749,805 - -0.4 749,805 - -0.7 749,805 - -0.6 749,805 - -1.1 749,828 + +0.5 749,829 - +0.3 749,829 - +0.1 749,831 - -0.1 749,970 + GFF1011 0.11 +1.1 749,971 - GFF1011 0.11 +0.9 749,971 - GFF1011 0.11 -1.7 749,971 - GFF1011 0.11 -0.1 749,971 - GFF1011 0.11 +0.5 749,971 - GFF1011 0.11 -1.2 750,040 + GFF1011 0.22 +0.4 750,040 + GFF1011 0.22 -1.4 750,041 - GFF1011 0.22 -0.8 750,091 + GFF1011 0.29 -0.8 750,091 + GFF1011 0.29 -1.0 750,092 - GFF1011 0.29 -0.7 750,092 - GFF1011 0.29 +0.4 750,092 - GFF1011 0.29 -1.1 750,092 - GFF1011 0.29 +0.1 750,092 - GFF1011 0.29 -0.5 750,092 - GFF1011 0.29 -1.0 750,238 - GFF1011 0.50 -0.6 750,307 - GFF1011 0.60 -1.2 750,337 + GFF1011 0.65 -0.2 750,337 + GFF1011 0.65 -0.9 750,337 + GFF1011 0.65 -0.5 750,338 - GFF1011 0.65 -1.0 750,338 - GFF1011 0.65 +0.2 750,345 + GFF1011 0.66 -0.6 750,345 + GFF1011 0.66 -0.3 750,345 + GFF1011 0.66 +0.5 750,381 + GFF1011 0.71 -1.5 750,382 - GFF1011 0.71 -1.4 750,382 - GFF1011 0.71 -0.3 750,382 - GFF1011 0.71 +0.0 750,388 + GFF1011 0.72 +0.9 750,517 + -1.3 750,517 + +0.1 750,517 + -1.8 750,517 + -0.6 750,518 - +0.3 750,518 - -1.2 750,518 - -1.5 750,524 + +0.2 750,524 + -1.3 750,525 - -1.7 750,576 + -0.4 750,577 - -0.2 750,577 - +0.2 750,577 - -2.0 750,580 + -0.5 750,618 + -0.7 750,618 + +0.2 750,619 - +0.0 750,619 - +0.0 750,619 - -0.2 750,979 + GFF1012 0.50 +1.2 750,979 + GFF1012 0.50 +0.0 750,979 + GFF1012 0.50 +0.0 750,979 + GFF1012 0.50 -0.0 750,979 + GFF1012 0.50 +0.0 750,979 + GFF1012 0.50 -0.3 750,980 - GFF1012 0.50 -0.5 750,980 - GFF1012 0.50 +0.1 750,980 - GFF1012 0.50 -0.3 751,078 + GFF1012 0.64 -0.2 751,356 + +0.0 751,356 + -0.1 751,356 + +0.2 751,357 - -1.2 752,235 - GFF1014 0.14 +0.2
Or see this region's nucleotide sequence