Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1009

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1007 and GFF1008 are separated by 194 nucleotidesGFF1008 and GFF1009 are separated by 6 nucleotidesGFF1009 and GFF1010 are separated by 46 nucleotides GFF1007 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 745,573 to 746,394 GFF1007 GFF1008 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 746,589 to 747,368 GFF1008 GFF1009 - Tricarboxylate transport protein TctC, at 747,375 to 748,355 GFF1009 GFF1010 - Rieske (2Fe-2S) region, at 748,402 to 749,676 GFF1010 Position (kb) 747 748 749Strain fitness (log2 ratio) -1 0 1at 746.381 kb on + strandat 746.381 kb on + strandat 746.382 kb on - strandat 746.418 kb on + strandat 746.418 kb on + strandat 746.481 kb on + strandat 746.481 kb on + strandat 746.482 kb on - strandat 746.513 kb on + strandat 746.513 kb on + strandat 746.513 kb on + strandat 746.514 kb on - strandat 746.514 kb on - strandat 746.514 kb on - strandat 746.555 kb on + strandat 746.586 kb on + strandat 746.590 kb on + strandat 746.590 kb on + strandat 746.590 kb on + strandat 746.590 kb on + strandat 746.591 kb on - strandat 746.591 kb on - strandat 746.659 kb on - strandat 746.659 kb on - strandat 746.996 kb on - strand, within GFF1008at 747.653 kb on + strand, within GFF1009at 747.654 kb on - strand, within GFF1009at 747.889 kb on + strand, within GFF1009at 747.890 kb on - strand, within GFF1009at 747.890 kb on - strand, within GFF1009at 747.890 kb on - strand, within GFF1009at 747.967 kb on + strand, within GFF1009at 747.968 kb on - strand, within GFF1009at 748.021 kb on + strand, within GFF1009at 748.022 kb on - strand, within GFF1009at 748.069 kb on + strand, within GFF1009at 748.069 kb on + strand, within GFF1009at 748.117 kb on + strand, within GFF1009at 748.117 kb on + strand, within GFF1009at 748.117 kb on + strand, within GFF1009at 748.117 kb on + strand, within GFF1009at 748.118 kb on - strand, within GFF1009at 748.118 kb on - strand, within GFF1009at 748.355 kb on + strandat 748.356 kb on - strandat 748.593 kb on + strand, within GFF1010at 748.612 kb on + strand, within GFF1010at 748.665 kb on - strand, within GFF1010at 748.697 kb on + strand, within GFF1010at 748.697 kb on + strand, within GFF1010at 748.697 kb on + strand, within GFF1010at 748.698 kb on - strand, within GFF1010at 748.736 kb on + strand, within GFF1010at 748.737 kb on - strand, within GFF1010at 748.737 kb on - strand, within GFF1010at 748.804 kb on - strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.882 kb on - strand, within GFF1010at 748.882 kb on - strand, within GFF1010at 748.882 kb on - strand, within GFF1010at 749.078 kb on + strand, within GFF1010at 749.078 kb on + strand, within GFF1010at 749.078 kb on + strand, within GFF1010at 749.138 kb on + strand, within GFF1010at 749.138 kb on + strand, within GFF1010at 749.138 kb on + strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.192 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.283 kb on + strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.286 kb on - strand, within GFF1010at 749.286 kb on - strand, within GFF1010at 749.286 kb on - strand, within GFF1010at 749.328 kb on + strand, within GFF1010at 749.329 kb on + strand, within GFF1010at 749.329 kb on + strand, within GFF1010at 749.329 kb on + strand, within GFF1010at 749.330 kb on - strand, within GFF1010at 749.330 kb on - strand, within GFF1010

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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746,381 + +0.6
746,381 + +0.5
746,382 - +0.2
746,418 + +0.2
746,418 + +0.7
746,481 + +0.3
746,481 + +0.2
746,482 - -0.0
746,513 + -1.0
746,513 + +0.2
746,513 + +0.1
746,514 - -0.8
746,514 - -0.8
746,514 - +0.1
746,555 + -0.4
746,586 + -0.0
746,590 + +0.9
746,590 + -0.2
746,590 + +0.8
746,590 + +0.4
746,591 - -1.3
746,591 - -1.0
746,659 - +0.1
746,659 - -0.1
746,996 - GFF1008 0.52 +0.2
747,653 + GFF1009 0.28 +0.8
747,654 - GFF1009 0.28 +0.1
747,889 + GFF1009 0.52 -0.1
747,890 - GFF1009 0.52 +0.0
747,890 - GFF1009 0.52 +0.5
747,890 - GFF1009 0.52 +0.2
747,967 + GFF1009 0.60 +0.2
747,968 - GFF1009 0.60 -0.5
748,021 + GFF1009 0.66 -0.2
748,022 - GFF1009 0.66 +0.4
748,069 + GFF1009 0.71 -0.4
748,069 + GFF1009 0.71 +0.5
748,117 + GFF1009 0.76 -0.3
748,117 + GFF1009 0.76 +0.4
748,117 + GFF1009 0.76 +0.7
748,117 + GFF1009 0.76 -0.3
748,118 - GFF1009 0.76 +0.3
748,118 - GFF1009 0.76 -0.1
748,355 + +0.2
748,356 - +0.0
748,593 + GFF1010 0.15 -0.1
748,612 + GFF1010 0.16 -1.4
748,665 - GFF1010 0.21 +1.1
748,697 + GFF1010 0.23 -0.3
748,697 + GFF1010 0.23 +0.2
748,697 + GFF1010 0.23 +1.1
748,698 - GFF1010 0.23 +0.2
748,736 + GFF1010 0.26 -0.2
748,737 - GFF1010 0.26 +1.5
748,737 - GFF1010 0.26 +0.2
748,804 - GFF1010 0.32 +0.1
748,881 + GFF1010 0.38 -0.8
748,881 + GFF1010 0.38 +0.1
748,881 + GFF1010 0.38 +0.7
748,881 + GFF1010 0.38 +0.5
748,881 + GFF1010 0.38 -0.3
748,881 + GFF1010 0.38 +0.6
748,882 - GFF1010 0.38 -0.9
748,882 - GFF1010 0.38 +0.3
748,882 - GFF1010 0.38 +1.1
749,078 + GFF1010 0.53 -0.3
749,078 + GFF1010 0.53 -0.0
749,078 + GFF1010 0.53 +1.5
749,138 + GFF1010 0.58 +0.3
749,138 + GFF1010 0.58 -0.7
749,138 + GFF1010 0.58 -0.7
749,139 - GFF1010 0.58 +0.7
749,139 - GFF1010 0.58 -0.0
749,139 - GFF1010 0.58 -0.5
749,139 - GFF1010 0.58 -0.7
749,139 - GFF1010 0.58 +0.3
749,192 + GFF1010 0.62 +0.1
749,213 + GFF1010 0.64 +0.1
749,213 + GFF1010 0.64 -0.2
749,213 + GFF1010 0.64 +0.1
749,213 + GFF1010 0.64 -1.3
749,213 + GFF1010 0.64 -0.3
749,213 + GFF1010 0.64 -0.4
749,213 + GFF1010 0.64 +0.1
749,213 + GFF1010 0.64 +0.1
749,213 + GFF1010 0.64 -0.1
749,213 + GFF1010 0.64 +0.7
749,213 + GFF1010 0.64 +0.2
749,214 - GFF1010 0.64 -0.2
749,214 - GFF1010 0.64 -0.5
749,214 - GFF1010 0.64 +0.0
749,214 - GFF1010 0.64 -0.0
749,214 - GFF1010 0.64 +0.2
749,214 - GFF1010 0.64 +0.9
749,214 - GFF1010 0.64 -1.1
749,283 + GFF1010 0.69 +0.7
749,284 - GFF1010 0.69 +0.1
749,284 - GFF1010 0.69 +0.2
749,284 - GFF1010 0.69 -1.0
749,284 - GFF1010 0.69 -0.0
749,284 - GFF1010 0.69 +0.1
749,285 + GFF1010 0.69 +0.9
749,285 + GFF1010 0.69 -0.7
749,285 + GFF1010 0.69 -1.3
749,285 + GFF1010 0.69 +0.7
749,285 + GFF1010 0.69 -1.5
749,286 - GFF1010 0.69 -0.5
749,286 - GFF1010 0.69 -0.2
749,286 - GFF1010 0.69 +0.5
749,328 + GFF1010 0.73 -0.2
749,329 + GFF1010 0.73 -0.2
749,329 + GFF1010 0.73 +0.0
749,329 + GFF1010 0.73 +0.2
749,330 - GFF1010 0.73 -1.1
749,330 - GFF1010 0.73 +0.4

Or see this region's nucleotide sequence