Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS18200

Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCOO64_RS18195 and COO64_RS18200 overlap by 4 nucleotidesCOO64_RS18200 and COO64_RS18205 overlap by 4 nucleotidesCOO64_RS18205 and COO64_RS18210 are separated by 178 nucleotides COO64_RS18195: COO64_RS18195 - iron ABC transporter permease, at 170,214 to 171,236 _RS18195 COO64_RS18200: COO64_RS18200 - ABC transporter substrate-binding protein, at 171,233 to 172,183 _RS18200 COO64_RS18205: COO64_RS18205 - ABC transporter ATP-binding protein, at 172,180 to 172,968 _RS18205 COO64_RS18210: COO64_RS18210 - TonB-dependent copper receptor, at 173,147 to 175,213 _RS18210 Position (kb) 171 172 173Strain fitness (log2 ratio) -1 0 1 2at 170.877 kb on - strand, within COO64_RS18195at 170.877 kb on - strand, within COO64_RS18195at 170.892 kb on + strand, within COO64_RS18195at 170.893 kb on - strand, within COO64_RS18195at 171.047 kb on + strand, within COO64_RS18195at 171.048 kb on - strand, within COO64_RS18195at 171.048 kb on - strand, within COO64_RS18195at 171.306 kb on + strandat 171.306 kb on + strandat 171.306 kb on + strandat 171.307 kb on - strandat 171.307 kb on - strandat 171.307 kb on - strandat 171.307 kb on - strandat 171.711 kb on + strand, within COO64_RS18200at 171.711 kb on + strand, within COO64_RS18200at 171.711 kb on + strand, within COO64_RS18200at 171.711 kb on + strand, within COO64_RS18200at 171.711 kb on + strand, within COO64_RS18200at 171.711 kb on + strand, within COO64_RS18200at 171.711 kb on + strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.712 kb on - strand, within COO64_RS18200at 171.774 kb on + strand, within COO64_RS18200at 171.775 kb on - strand, within COO64_RS18200at 171.775 kb on - strand, within COO64_RS18200at 171.837 kb on + strand, within COO64_RS18200at 171.897 kb on + strand, within COO64_RS18200at 171.897 kb on + strand, within COO64_RS18200at 171.897 kb on + strand, within COO64_RS18200at 171.898 kb on - strand, within COO64_RS18200at 172.200 kb on + strandat 172.331 kb on + strand, within COO64_RS18205at 172.331 kb on + strand, within COO64_RS18205at 172.331 kb on + strand, within COO64_RS18205at 172.331 kb on + strand, within COO64_RS18205at 172.331 kb on + strand, within COO64_RS18205at 172.331 kb on + strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.332 kb on - strand, within COO64_RS18205at 172.940 kb on + strandat 172.940 kb on + strandat 172.941 kb on - strandat 173.001 kb on + strandat 173.001 kb on + strandat 173.001 kb on + strandat 173.001 kb on + strandat 173.001 kb on + strandat 173.001 kb on + strandat 173.001 kb on + strandat 173.001 kb on + strandat 173.002 kb on - strandat 173.021 kb on - strandat 173.179 kb on + strandat 173.180 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X
remove
170,877 - COO64_RS18195 0.65 -0.3
170,877 - COO64_RS18195 0.65 +0.2
170,892 + COO64_RS18195 0.66 -1.1
170,893 - COO64_RS18195 0.66 -1.2
171,047 + COO64_RS18195 0.81 -0.6
171,048 - COO64_RS18195 0.82 -0.2
171,048 - COO64_RS18195 0.82 +1.1
171,306 + -0.4
171,306 + +0.2
171,306 + +1.7
171,307 - +0.4
171,307 - -0.5
171,307 - -0.1
171,307 - -0.7
171,711 + COO64_RS18200 0.50 +0.1
171,711 + COO64_RS18200 0.50 -0.5
171,711 + COO64_RS18200 0.50 -1.1
171,711 + COO64_RS18200 0.50 +1.4
171,711 + COO64_RS18200 0.50 +1.3
171,711 + COO64_RS18200 0.50 -0.2
171,711 + COO64_RS18200 0.50 -0.1
171,712 - COO64_RS18200 0.50 +0.8
171,712 - COO64_RS18200 0.50 +0.3
171,712 - COO64_RS18200 0.50 -0.5
171,712 - COO64_RS18200 0.50 -0.4
171,712 - COO64_RS18200 0.50 -0.1
171,712 - COO64_RS18200 0.50 -0.1
171,712 - COO64_RS18200 0.50 -0.6
171,712 - COO64_RS18200 0.50 -0.1
171,712 - COO64_RS18200 0.50 -0.7
171,712 - COO64_RS18200 0.50 -0.1
171,712 - COO64_RS18200 0.50 +0.2
171,712 - COO64_RS18200 0.50 +0.3
171,774 + COO64_RS18200 0.57 +0.9
171,775 - COO64_RS18200 0.57 -1.6
171,775 - COO64_RS18200 0.57 +0.4
171,837 + COO64_RS18200 0.64 +0.1
171,897 + COO64_RS18200 0.70 +0.2
171,897 + COO64_RS18200 0.70 -0.5
171,897 + COO64_RS18200 0.70 -0.4
171,898 - COO64_RS18200 0.70 -0.4
172,200 + +1.4
172,331 + COO64_RS18205 0.19 -0.7
172,331 + COO64_RS18205 0.19 +0.5
172,331 + COO64_RS18205 0.19 -0.1
172,331 + COO64_RS18205 0.19 +2.4
172,331 + COO64_RS18205 0.19 +0.4
172,331 + COO64_RS18205 0.19 +0.0
172,332 - COO64_RS18205 0.19 -0.3
172,332 - COO64_RS18205 0.19 -0.1
172,332 - COO64_RS18205 0.19 -0.5
172,332 - COO64_RS18205 0.19 -0.3
172,332 - COO64_RS18205 0.19 -0.4
172,332 - COO64_RS18205 0.19 -0.4
172,332 - COO64_RS18205 0.19 +0.6
172,332 - COO64_RS18205 0.19 -0.0
172,332 - COO64_RS18205 0.19 +0.8
172,332 - COO64_RS18205 0.19 +0.9
172,940 + -0.6
172,940 + -0.8
172,941 - +0.2
173,001 + +0.0
173,001 + -1.0
173,001 + +0.3
173,001 + +0.2
173,001 + -0.2
173,001 + +0.2
173,001 + -1.3
173,001 + -0.6
173,002 - -0.6
173,021 - -0.7
173,179 + +1.7
173,180 - -0.1

Or see this region's nucleotide sequence