Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS00910 and argA are separated by 157 nucleotides argA and argE are separated by 115 nucleotides
COO64_RS00910: COO64_RS00910 - glutamine synthetase family protein, at 194,259 to 195,635
_RS00910
COO64_RS00915: argA - amino-acid N-acetyltransferase, at 195,793 to 197,091
argA
COO64_RS00920: argE - acetylornithine deacetylase, at 197,207 to 198,364
argE
Position (kb) 195
196
197
198 Strain fitness (log2 ratio) -2
-1
0
1 at 194.793 kb on + strand, within COO64_RS00910 at 194.793 kb on + strand, within COO64_RS00910 at 194.794 kb on - strand, within COO64_RS00910 at 194.794 kb on - strand, within COO64_RS00910 at 194.794 kb on - strand, within COO64_RS00910 at 194.817 kb on + strand, within COO64_RS00910 at 194.818 kb on - strand, within COO64_RS00910 at 194.956 kb on - strand, within COO64_RS00910 at 194.994 kb on + strand, within COO64_RS00910 at 195.012 kb on - strand, within COO64_RS00910 at 195.069 kb on - strand, within COO64_RS00910 at 195.069 kb on - strand, within COO64_RS00910 at 195.069 kb on - strand, within COO64_RS00910 at 195.069 kb on - strand, within COO64_RS00910 at 195.069 kb on - strand, within COO64_RS00910 at 195.069 kb on - strand, within COO64_RS00910 at 195.211 kb on - strand, within COO64_RS00910 at 195.234 kb on + strand, within COO64_RS00910 at 195.234 kb on + strand, within COO64_RS00910 at 195.235 kb on - strand, within COO64_RS00910 at 195.235 kb on - strand, within COO64_RS00910 at 195.235 kb on - strand, within COO64_RS00910 at 195.235 kb on - strand, within COO64_RS00910 at 195.235 kb on - strand, within COO64_RS00910 at 195.272 kb on + strand, within COO64_RS00910 at 195.354 kb on + strand, within COO64_RS00910 at 195.441 kb on + strand, within COO64_RS00910 at 195.441 kb on + strand, within COO64_RS00910 at 195.442 kb on - strand, within COO64_RS00910 at 195.522 kb on + strand at 195.522 kb on + strand at 195.522 kb on + strand at 195.522 kb on + strand at 195.523 kb on - strand at 195.523 kb on - strand at 195.523 kb on - strand at 195.523 kb on - strand at 195.523 kb on - strand at 195.523 kb on - strand at 195.523 kb on - strand at 195.537 kb on + strand at 195.537 kb on + strand at 195.537 kb on + strand at 195.537 kb on + strand at 195.537 kb on + strand at 195.538 kb on - strand at 195.545 kb on + strand at 195.545 kb on + strand at 195.545 kb on + strand at 195.546 kb on - strand at 195.561 kb on - strand at 195.609 kb on + strand at 195.609 kb on + strand at 195.609 kb on + strand at 195.609 kb on + strand at 195.610 kb on - strand at 195.610 kb on - strand at 195.610 kb on - strand at 195.610 kb on - strand at 195.610 kb on - strand at 195.618 kb on + strand at 195.626 kb on + strand at 195.626 kb on + strand at 195.633 kb on + strand at 195.634 kb on - strand at 195.736 kb on - strand at 195.736 kb on - strand at 195.736 kb on - strand at 195.736 kb on - strand at 195.736 kb on - strand at 195.736 kb on - strand at 195.822 kb on + strand at 195.823 kb on - strand at 195.830 kb on + strand at 195.830 kb on + strand at 195.830 kb on + strand at 195.830 kb on + strand at 195.830 kb on + strand at 195.831 kb on - strand at 195.831 kb on - strand at 195.836 kb on + strand at 195.836 kb on + strand at 195.837 kb on - strand at 195.837 kb on - strand at 195.837 kb on - strand at 196.064 kb on + strand, within argA at 196.313 kb on + strand, within argA at 196.313 kb on + strand, within argA at 196.313 kb on + strand, within argA at 196.314 kb on - strand, within argA at 196.314 kb on - strand, within argA at 196.314 kb on - strand, within argA at 196.314 kb on - strand, within argA at 196.323 kb on + strand, within argA at 196.324 kb on - strand, within argA at 196.324 kb on - strand, within argA at 196.385 kb on + strand, within argA at 196.667 kb on + strand, within argA at 196.667 kb on + strand, within argA at 196.668 kb on - strand, within argA at 196.668 kb on - strand, within argA at 196.668 kb on - strand, within argA at 196.862 kb on + strand, within argA at 196.863 kb on - strand, within argA at 196.863 kb on - strand, within argA at 196.936 kb on + strand, within argA at 196.936 kb on + strand, within argA at 196.937 kb on - strand, within argA at 196.974 kb on + strand at 197.051 kb on + strand at 197.051 kb on + strand at 197.051 kb on + strand at 197.051 kb on + strand at 197.051 kb on + strand at 197.052 kb on - strand at 197.052 kb on - strand at 197.052 kb on - strand at 197.052 kb on - strand at 197.082 kb on - strand at 197.107 kb on - strand at 197.114 kb on - strand at 197.219 kb on + strand at 197.235 kb on + strand at 197.236 kb on - strand at 197.236 kb on - strand at 197.236 kb on - strand at 197.259 kb on - strand at 197.269 kb on + strand at 197.269 kb on + strand at 197.269 kb on + strand at 197.269 kb on + strand at 197.270 kb on - strand at 197.270 kb on - strand at 197.295 kb on + strand at 197.295 kb on + strand at 197.295 kb on + strand at 197.296 kb on - strand at 197.296 kb on - strand at 197.298 kb on - strand at 197.370 kb on + strand, within argE at 197.371 kb on - strand, within argE at 197.416 kb on + strand, within argE at 197.435 kb on + strand, within argE at 197.493 kb on + strand, within argE at 197.493 kb on + strand, within argE at 197.494 kb on - strand, within argE at 197.620 kb on + strand, within argE at 197.620 kb on + strand, within argE at 197.620 kb on + strand, within argE at 197.621 kb on - strand, within argE at 197.621 kb on - strand, within argE at 197.621 kb on - strand, within argE at 197.621 kb on - strand, within argE at 197.621 kb on - strand, within argE at 197.647 kb on + strand, within argE at 197.647 kb on + strand, within argE at 197.647 kb on + strand, within argE at 197.647 kb on + strand, within argE at 197.648 kb on - strand, within argE at 197.648 kb on - strand, within argE at 197.648 kb on - strand, within argE at 197.648 kb on - strand, within argE at 197.648 kb on - strand, within argE at 197.648 kb on - strand, within argE at 197.648 kb on - strand, within argE at 197.648 kb on - strand, within argE at 197.648 kb on - strand, within argE at 197.648 kb on - strand, within argE at 198.059 kb on + strand, within argE at 198.059 kb on + strand, within argE at 198.060 kb on - strand, within argE
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X remove 194,793 + COO64_RS00910 0.39 -0.4 194,793 + COO64_RS00910 0.39 +0.1 194,794 - COO64_RS00910 0.39 -1.8 194,794 - COO64_RS00910 0.39 -0.9 194,794 - COO64_RS00910 0.39 +0.3 194,817 + COO64_RS00910 0.41 -0.8 194,818 - COO64_RS00910 0.41 +0.4 194,956 - COO64_RS00910 0.51 +0.7 194,994 + COO64_RS00910 0.53 -0.3 195,012 - COO64_RS00910 0.55 -0.6 195,069 - COO64_RS00910 0.59 +0.5 195,069 - COO64_RS00910 0.59 +0.3 195,069 - COO64_RS00910 0.59 +0.7 195,069 - COO64_RS00910 0.59 +0.1 195,069 - COO64_RS00910 0.59 -1.7 195,069 - COO64_RS00910 0.59 +0.7 195,211 - COO64_RS00910 0.69 +0.2 195,234 + COO64_RS00910 0.71 +0.1 195,234 + COO64_RS00910 0.71 +0.6 195,235 - COO64_RS00910 0.71 +0.0 195,235 - COO64_RS00910 0.71 -0.4 195,235 - COO64_RS00910 0.71 +0.5 195,235 - COO64_RS00910 0.71 -0.3 195,235 - COO64_RS00910 0.71 -0.3 195,272 + COO64_RS00910 0.74 +0.0 195,354 + COO64_RS00910 0.80 -0.4 195,441 + COO64_RS00910 0.86 +0.4 195,441 + COO64_RS00910 0.86 +0.2 195,442 - COO64_RS00910 0.86 -0.0 195,522 + -2.1 195,522 + -0.3 195,522 + +0.3 195,522 + +0.2 195,523 - -0.2 195,523 - -0.3 195,523 - -0.5 195,523 - -0.1 195,523 - -0.3 195,523 - +0.3 195,523 - -0.1 195,537 + -1.1 195,537 + +0.5 195,537 + -0.2 195,537 + +1.7 195,537 + -0.1 195,538 - +0.4 195,545 + -0.7 195,545 + +0.1 195,545 + -1.3 195,546 - +1.5 195,561 - -0.3 195,609 + +0.4 195,609 + -0.1 195,609 + +1.3 195,609 + -0.1 195,610 - +1.2 195,610 - +0.5 195,610 - +0.4 195,610 - -0.4 195,610 - +0.3 195,618 + -0.1 195,626 + -0.6 195,626 + -0.4 195,633 + +0.9 195,634 - -0.2 195,736 - +0.7 195,736 - -0.7 195,736 - -0.9 195,736 - -0.3 195,736 - -0.5 195,736 - +0.0 195,822 + +0.2 195,823 - +0.5 195,830 + +0.3 195,830 + +0.7 195,830 + +0.8 195,830 + -0.3 195,830 + -1.6 195,831 - +0.4 195,831 - +0.9 195,836 + -0.2 195,836 + -0.8 195,837 - -0.4 195,837 - -0.3 195,837 - -0.5 196,064 + argA COO64_RS00915 0.21 -0.3 196,313 + argA COO64_RS00915 0.40 -1.0 196,313 + argA COO64_RS00915 0.40 +1.3 196,313 + argA COO64_RS00915 0.40 -0.2 196,314 - argA COO64_RS00915 0.40 -2.6 196,314 - argA COO64_RS00915 0.40 -1.2 196,314 - argA COO64_RS00915 0.40 +0.1 196,314 - argA COO64_RS00915 0.40 -1.6 196,323 + argA COO64_RS00915 0.41 +0.3 196,324 - argA COO64_RS00915 0.41 -0.5 196,324 - argA COO64_RS00915 0.41 -0.8 196,385 + argA COO64_RS00915 0.46 +0.7 196,667 + argA COO64_RS00915 0.67 -1.0 196,667 + argA COO64_RS00915 0.67 -0.4 196,668 - argA COO64_RS00915 0.67 +0.2 196,668 - argA COO64_RS00915 0.67 +0.5 196,668 - argA COO64_RS00915 0.67 +1.0 196,862 + argA COO64_RS00915 0.82 -0.5 196,863 - argA COO64_RS00915 0.82 +0.7 196,863 - argA COO64_RS00915 0.82 -0.0 196,936 + argA COO64_RS00915 0.88 -0.4 196,936 + argA COO64_RS00915 0.88 -0.1 196,937 - argA COO64_RS00915 0.88 +1.3 196,974 + -1.7 197,051 + -0.1 197,051 + -0.7 197,051 + -1.0 197,051 + -0.1 197,051 + -0.4 197,052 - +0.7 197,052 - +0.1 197,052 - +0.5 197,052 - -1.2 197,082 - +0.1 197,107 - -0.7 197,114 - +0.2 197,219 + +0.7 197,235 + +0.1 197,236 - -0.7 197,236 - -0.1 197,236 - -1.4 197,259 - -0.5 197,269 + -1.3 197,269 + +0.1 197,269 + -0.3 197,269 + +0.7 197,270 - +0.0 197,270 - -0.3 197,295 + +1.1 197,295 + +0.2 197,295 + -0.1 197,296 - -0.2 197,296 - +1.1 197,298 - +0.6 197,370 + argE COO64_RS00920 0.14 -0.2 197,371 - argE COO64_RS00920 0.14 -0.5 197,416 + argE COO64_RS00920 0.18 +0.2 197,435 + argE COO64_RS00920 0.20 +0.3 197,493 + argE COO64_RS00920 0.25 -0.2 197,493 + argE COO64_RS00920 0.25 -0.0 197,494 - argE COO64_RS00920 0.25 -0.4 197,620 + argE COO64_RS00920 0.36 +0.3 197,620 + argE COO64_RS00920 0.36 +0.3 197,620 + argE COO64_RS00920 0.36 -0.0 197,621 - argE COO64_RS00920 0.36 -0.5 197,621 - argE COO64_RS00920 0.36 -0.2 197,621 - argE COO64_RS00920 0.36 +0.1 197,621 - argE COO64_RS00920 0.36 +0.2 197,621 - argE COO64_RS00920 0.36 +0.5 197,647 + argE COO64_RS00920 0.38 -0.4 197,647 + argE COO64_RS00920 0.38 +0.0 197,647 + argE COO64_RS00920 0.38 -0.5 197,647 + argE COO64_RS00920 0.38 +0.1 197,648 - argE COO64_RS00920 0.38 +1.2 197,648 - argE COO64_RS00920 0.38 -0.0 197,648 - argE COO64_RS00920 0.38 +0.5 197,648 - argE COO64_RS00920 0.38 -0.8 197,648 - argE COO64_RS00920 0.38 +0.3 197,648 - argE COO64_RS00920 0.38 +0.5 197,648 - argE COO64_RS00920 0.38 +0.5 197,648 - argE COO64_RS00920 0.38 +0.1 197,648 - argE COO64_RS00920 0.38 -1.6 197,648 - argE COO64_RS00920 0.38 -0.4 198,059 + argE COO64_RS00920 0.74 -1.3 198,059 + argE COO64_RS00920 0.74 +0.7 198,060 - argE COO64_RS00920 0.74 -1.3
Or see this region's nucleotide sequence