Experiment: Lentilan from mushroom 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04618 and BACOVA_04619 are separated by 57 nucleotides BACOVA_04619 and BACOVA_04620 are separated by 415 nucleotides BACOVA_04620 and BACOVA_04621 are separated by 82 nucleotides
BACOVA_04618: BACOVA_04618 - putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 15,503 to 16,723
_04618
BACOVA_04619: BACOVA_04619 - tRNA-Pro, at 16,781 to 16,855
_04619
BACOVA_04620: BACOVA_04620 - hypothetical protein, at 17,271 to 17,423
_04620
BACOVA_04621: BACOVA_04621 - site-specific recombinase, phage integrase family, at 17,506 to 18,780
_04621
Position (kb)
17
18 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 16.295 kb on - strand, within BACOVA_04618 at 16.324 kb on + strand, within BACOVA_04618 at 16.563 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.612 kb on - strand at 16.613 kb on + strand at 16.614 kb on - strand at 16.614 kb on - strand at 16.616 kb on + strand at 16.617 kb on - strand at 16.654 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.661 kb on - strand at 16.686 kb on + strand at 16.686 kb on + strand at 16.687 kb on - strand at 16.687 kb on - strand at 16.696 kb on + strand at 16.697 kb on - strand at 16.702 kb on + strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.919 kb on + strand at 16.933 kb on + strand at 16.933 kb on + strand at 17.020 kb on + strand at 17.021 kb on - strand at 17.024 kb on + strand at 17.082 kb on + strand at 17.153 kb on - strand at 17.162 kb on - strand at 17.162 kb on - strand at 17.164 kb on - strand at 17.334 kb on - strand, within BACOVA_04620 at 17.479 kb on - strand at 17.530 kb on - strand at 17.535 kb on + strand at 17.597 kb on + strand at 17.597 kb on + strand at 17.598 kb on - strand at 17.603 kb on + strand at 17.622 kb on + strand at 17.623 kb on - strand at 17.632 kb on + strand at 17.670 kb on + strand, within BACOVA_04621 at 17.680 kb on - strand, within BACOVA_04621 at 17.692 kb on - strand, within BACOVA_04621 at 17.701 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.728 kb on + strand, within BACOVA_04621 at 17.728 kb on + strand, within BACOVA_04621 at 17.728 kb on + strand, within BACOVA_04621 at 17.729 kb on - strand, within BACOVA_04621 at 17.730 kb on + strand, within BACOVA_04621 at 17.730 kb on + strand, within BACOVA_04621 at 17.750 kb on - strand, within BACOVA_04621 at 17.766 kb on + strand, within BACOVA_04621 at 17.766 kb on + strand, within BACOVA_04621 at 17.766 kb on + strand, within BACOVA_04621 at 17.774 kb on + strand, within BACOVA_04621 at 17.798 kb on + strand, within BACOVA_04621 at 17.860 kb on + strand, within BACOVA_04621 at 17.861 kb on - strand, within BACOVA_04621 at 17.866 kb on + strand, within BACOVA_04621 at 17.871 kb on + strand, within BACOVA_04621 at 17.899 kb on - strand, within BACOVA_04621 at 17.939 kb on + strand, within BACOVA_04621 at 17.943 kb on + strand, within BACOVA_04621 at 17.943 kb on + strand, within BACOVA_04621 at 17.944 kb on - strand, within BACOVA_04621 at 17.944 kb on - strand, within BACOVA_04621 at 17.999 kb on + strand, within BACOVA_04621 at 18.000 kb on - strand, within BACOVA_04621 at 18.004 kb on + strand, within BACOVA_04621 at 18.005 kb on - strand, within BACOVA_04621 at 18.060 kb on + strand, within BACOVA_04621 at 18.060 kb on + strand, within BACOVA_04621 at 18.060 kb on + strand, within BACOVA_04621 at 18.061 kb on - strand, within BACOVA_04621 at 18.064 kb on + strand, within BACOVA_04621 at 18.072 kb on + strand, within BACOVA_04621 at 18.126 kb on + strand, within BACOVA_04621 at 18.161 kb on + strand, within BACOVA_04621 at 18.194 kb on - strand, within BACOVA_04621 at 18.197 kb on + strand, within BACOVA_04621 at 18.222 kb on - strand, within BACOVA_04621 at 18.276 kb on - strand, within BACOVA_04621 at 18.313 kb on - strand, within BACOVA_04621 at 18.337 kb on - strand, within BACOVA_04621 at 18.371 kb on - strand, within BACOVA_04621 at 18.416 kb on + strand, within BACOVA_04621 at 18.417 kb on - strand, within BACOVA_04621 at 18.417 kb on - strand, within BACOVA_04621
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C) remove 16,295 - BACOVA_04618 0.65 -1.1 16,324 + BACOVA_04618 0.67 -1.9 16,563 + BACOVA_04618 0.87 +0.2 16,594 + BACOVA_04618 0.89 -0.3 16,594 + BACOVA_04618 0.89 -1.8 16,612 - -0.6 16,613 + -2.0 16,614 - -0.1 16,614 - +1.0 16,616 + +0.4 16,617 - -0.8 16,654 + -0.7 16,660 + -1.8 16,660 + -0.4 16,660 + -0.7 16,661 - +0.6 16,686 + +0.2 16,686 + +1.0 16,687 - -1.2 16,687 - -0.2 16,696 + -1.3 16,697 - -0.6 16,702 + +0.2 16,703 - -0.3 16,703 - -0.8 16,703 - +0.0 16,919 + -0.5 16,933 + -1.0 16,933 + -0.2 17,020 + +1.6 17,021 - -0.3 17,024 + -0.5 17,082 + -0.5 17,153 - +1.6 17,162 - -0.3 17,162 - -0.4 17,164 - -0.5 17,334 - BACOVA_04620 0.41 -0.5 17,479 - -0.4 17,530 - +0.7 17,535 + -0.3 17,597 + +0.4 17,597 + -1.0 17,598 - -0.8 17,603 + -2.1 17,622 + -0.1 17,623 - -0.2 17,632 + -2.7 17,670 + BACOVA_04621 0.13 +0.1 17,680 - BACOVA_04621 0.14 -1.0 17,692 - BACOVA_04621 0.15 +0.5 17,701 - BACOVA_04621 0.15 -1.7 17,720 - BACOVA_04621 0.17 +0.2 17,720 - BACOVA_04621 0.17 +0.6 17,720 - BACOVA_04621 0.17 +1.3 17,728 + BACOVA_04621 0.17 -2.8 17,728 + BACOVA_04621 0.17 -1.4 17,728 + BACOVA_04621 0.17 +0.9 17,729 - BACOVA_04621 0.17 -0.9 17,730 + BACOVA_04621 0.18 +0.8 17,730 + BACOVA_04621 0.18 -0.5 17,750 - BACOVA_04621 0.19 +0.6 17,766 + BACOVA_04621 0.20 -0.3 17,766 + BACOVA_04621 0.20 -0.2 17,766 + BACOVA_04621 0.20 -0.8 17,774 + BACOVA_04621 0.21 +0.3 17,798 + BACOVA_04621 0.23 -0.4 17,860 + BACOVA_04621 0.28 -1.0 17,861 - BACOVA_04621 0.28 -0.3 17,866 + BACOVA_04621 0.28 -1.2 17,871 + BACOVA_04621 0.29 +0.0 17,899 - BACOVA_04621 0.31 +0.9 17,939 + BACOVA_04621 0.34 +0.7 17,943 + BACOVA_04621 0.34 -0.1 17,943 + BACOVA_04621 0.34 +0.4 17,944 - BACOVA_04621 0.34 -0.8 17,944 - BACOVA_04621 0.34 -0.6 17,999 + BACOVA_04621 0.39 +1.3 18,000 - BACOVA_04621 0.39 -0.3 18,004 + BACOVA_04621 0.39 -0.8 18,005 - BACOVA_04621 0.39 -0.5 18,060 + BACOVA_04621 0.43 +0.0 18,060 + BACOVA_04621 0.43 +0.5 18,060 + BACOVA_04621 0.43 -0.2 18,061 - BACOVA_04621 0.44 +0.7 18,064 + BACOVA_04621 0.44 -0.4 18,072 + BACOVA_04621 0.44 -1.0 18,126 + BACOVA_04621 0.49 +0.4 18,161 + BACOVA_04621 0.51 -1.1 18,194 - BACOVA_04621 0.54 +0.7 18,197 + BACOVA_04621 0.54 +0.6 18,222 - BACOVA_04621 0.56 -0.5 18,276 - BACOVA_04621 0.60 -0.4 18,313 - BACOVA_04621 0.63 +1.0 18,337 - BACOVA_04621 0.65 +1.8 18,371 - BACOVA_04621 0.68 +1.8 18,416 + BACOVA_04621 0.71 -1.3 18,417 - BACOVA_04621 0.71 +0.6 18,417 - BACOVA_04621 0.71 +0.2
Or see this region's nucleotide sequence