Experiment: Lentilan from mushroom 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03813 and BACOVA_03814 are separated by 113 nucleotides BACOVA_03814 and BACOVA_03815 are separated by 454 nucleotides BACOVA_03815 and BACOVA_03816 are separated by 84 nucleotides BACOVA_03816 and BACOVA_03817 are separated by 70 nucleotides
BACOVA_03813: BACOVA_03813 - TonB-dependent receptor, at 157,384 to 159,723
_03813
BACOVA_03814: BACOVA_03814 - hypothetical protein, at 159,837 to 159,983
_03814
BACOVA_03815: BACOVA_03815 - TonB-dependent receptor plug domain protein, at 160,438 to 162,624
_03815
BACOVA_03816: BACOVA_03816 - hypothetical protein, at 162,709 to 163,065
_03816
BACOVA_03817: BACOVA_03817 - TrkA C-terminal domain protein, at 163,136 to 164,734
_03817
Position (kb) 160
161
162
163 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 159.459 kb on - strand, within BACOVA_03813 at 159.471 kb on + strand, within BACOVA_03813 at 159.617 kb on - strand at 159.759 kb on - strand at 159.762 kb on - strand at 159.807 kb on - strand at 159.807 kb on - strand at 159.811 kb on + strand at 159.812 kb on - strand at 159.812 kb on - strand at 159.868 kb on - strand, within BACOVA_03814 at 159.868 kb on - strand, within BACOVA_03814 at 159.925 kb on - strand, within BACOVA_03814 at 159.933 kb on + strand, within BACOVA_03814 at 159.933 kb on + strand, within BACOVA_03814 at 159.933 kb on + strand, within BACOVA_03814 at 159.934 kb on - strand, within BACOVA_03814 at 159.934 kb on - strand, within BACOVA_03814 at 159.958 kb on - strand, within BACOVA_03814 at 160.002 kb on + strand at 160.002 kb on + strand at 160.023 kb on - strand at 160.029 kb on - strand at 160.070 kb on + strand at 160.135 kb on - strand at 160.155 kb on + strand at 160.156 kb on - strand at 160.157 kb on + strand at 160.158 kb on - strand at 160.165 kb on + strand at 160.166 kb on - strand at 160.197 kb on + strand at 160.198 kb on - strand at 160.198 kb on - strand at 160.211 kb on - strand at 160.242 kb on + strand at 160.271 kb on + strand at 160.275 kb on + strand at 160.276 kb on - strand at 160.287 kb on - strand at 160.355 kb on + strand at 160.355 kb on + strand at 160.356 kb on - strand at 160.359 kb on + strand at 160.360 kb on - strand at 160.458 kb on - strand at 160.577 kb on + strand at 160.577 kb on + strand at 160.578 kb on - strand at 160.596 kb on + strand at 160.597 kb on - strand at 160.597 kb on - strand at 160.601 kb on - strand at 160.620 kb on - strand at 160.641 kb on - strand at 160.641 kb on - strand at 160.641 kb on - strand at 160.752 kb on + strand, within BACOVA_03815 at 160.761 kb on - strand, within BACOVA_03815 at 160.761 kb on - strand, within BACOVA_03815 at 160.815 kb on - strand, within BACOVA_03815 at 160.821 kb on + strand, within BACOVA_03815 at 160.822 kb on - strand, within BACOVA_03815 at 160.867 kb on + strand, within BACOVA_03815 at 160.867 kb on + strand, within BACOVA_03815 at 160.876 kb on + strand, within BACOVA_03815 at 160.877 kb on - strand, within BACOVA_03815 at 160.897 kb on + strand, within BACOVA_03815 at 160.935 kb on - strand, within BACOVA_03815 at 160.939 kb on - strand, within BACOVA_03815 at 161.075 kb on + strand, within BACOVA_03815 at 161.094 kb on + strand, within BACOVA_03815 at 161.112 kb on - strand, within BACOVA_03815 at 161.157 kb on + strand, within BACOVA_03815 at 161.252 kb on - strand, within BACOVA_03815 at 161.274 kb on + strand, within BACOVA_03815 at 161.275 kb on - strand, within BACOVA_03815 at 161.275 kb on - strand, within BACOVA_03815 at 161.275 kb on - strand, within BACOVA_03815 at 161.354 kb on + strand, within BACOVA_03815 at 161.360 kb on + strand, within BACOVA_03815 at 161.432 kb on + strand, within BACOVA_03815 at 161.433 kb on - strand, within BACOVA_03815 at 161.433 kb on - strand, within BACOVA_03815 at 161.630 kb on - strand, within BACOVA_03815 at 161.660 kb on + strand, within BACOVA_03815 at 161.758 kb on - strand, within BACOVA_03815 at 161.758 kb on - strand, within BACOVA_03815 at 161.760 kb on - strand, within BACOVA_03815 at 161.809 kb on - strand, within BACOVA_03815 at 161.838 kb on + strand, within BACOVA_03815 at 161.839 kb on - strand, within BACOVA_03815 at 161.844 kb on + strand, within BACOVA_03815 at 161.845 kb on - strand, within BACOVA_03815 at 161.856 kb on + strand, within BACOVA_03815 at 161.889 kb on + strand, within BACOVA_03815 at 161.968 kb on + strand, within BACOVA_03815 at 161.968 kb on + strand, within BACOVA_03815 at 161.968 kb on + strand, within BACOVA_03815 at 161.969 kb on - strand, within BACOVA_03815 at 161.969 kb on - strand, within BACOVA_03815 at 161.999 kb on + strand, within BACOVA_03815 at 161.999 kb on + strand, within BACOVA_03815 at 162.000 kb on - strand, within BACOVA_03815 at 162.019 kb on - strand, within BACOVA_03815 at 162.108 kb on + strand, within BACOVA_03815 at 162.159 kb on + strand, within BACOVA_03815 at 162.247 kb on + strand, within BACOVA_03815 at 162.250 kb on + strand, within BACOVA_03815 at 162.251 kb on - strand, within BACOVA_03815 at 162.254 kb on - strand, within BACOVA_03815 at 162.284 kb on - strand, within BACOVA_03815 at 162.345 kb on + strand, within BACOVA_03815 at 162.348 kb on - strand, within BACOVA_03815 at 162.404 kb on + strand, within BACOVA_03815 at 162.405 kb on - strand, within BACOVA_03815 at 162.438 kb on + strand at 162.442 kb on - strand at 162.442 kb on - strand at 162.460 kb on + strand at 162.460 kb on + strand at 162.463 kb on - strand at 162.465 kb on - strand at 162.530 kb on - strand at 162.614 kb on + strand at 162.636 kb on + strand at 162.654 kb on - strand at 162.654 kb on - strand at 162.674 kb on - strand at 162.695 kb on + strand at 162.696 kb on - strand at 162.696 kb on - strand at 162.744 kb on + strand at 162.744 kb on + strand at 162.745 kb on - strand, within BACOVA_03816 at 162.777 kb on - strand, within BACOVA_03816 at 162.777 kb on - strand, within BACOVA_03816 at 162.786 kb on - strand, within BACOVA_03816 at 162.809 kb on + strand, within BACOVA_03816 at 162.810 kb on - strand, within BACOVA_03816 at 162.869 kb on - strand, within BACOVA_03816 at 163.018 kb on - strand, within BACOVA_03816 at 163.022 kb on - strand, within BACOVA_03816 at 163.034 kb on + strand at 163.035 kb on + strand at 163.042 kb on - strand at 163.101 kb on - strand at 163.141 kb on - strand at 163.182 kb on - strand at 163.209 kb on + strand at 163.209 kb on + strand at 163.210 kb on - strand at 163.215 kb on - strand at 163.229 kb on - strand at 163.347 kb on - strand, within BACOVA_03817 at 163.429 kb on + strand, within BACOVA_03817 at 163.508 kb on - strand, within BACOVA_03817 at 163.531 kb on + strand, within BACOVA_03817 at 163.557 kb on - strand, within BACOVA_03817 at 163.615 kb on + strand, within BACOVA_03817 at 163.615 kb on + strand, within BACOVA_03817 at 163.615 kb on + strand, within BACOVA_03817 at 163.619 kb on + strand, within BACOVA_03817
Per-strain Table
Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C) remove 159,459 - BACOVA_03813 0.89 +1.0 159,471 + BACOVA_03813 0.89 -1.5 159,617 - -0.8 159,759 - -0.0 159,762 - +3.0 159,807 - +0.4 159,807 - -0.2 159,811 + -0.6 159,812 - +0.5 159,812 - +0.4 159,868 - BACOVA_03814 0.21 +0.2 159,868 - BACOVA_03814 0.21 +2.0 159,925 - BACOVA_03814 0.60 -1.4 159,933 + BACOVA_03814 0.65 -2.3 159,933 + BACOVA_03814 0.65 +0.4 159,933 + BACOVA_03814 0.65 +2.0 159,934 - BACOVA_03814 0.66 +1.2 159,934 - BACOVA_03814 0.66 -1.0 159,958 - BACOVA_03814 0.82 +0.5 160,002 + +1.1 160,002 + -0.6 160,023 - -0.1 160,029 - +0.7 160,070 + -0.7 160,135 - -1.1 160,155 + +0.1 160,156 - +0.7 160,157 + +0.4 160,158 - -1.0 160,165 + +0.1 160,166 - -0.6 160,197 + -1.4 160,198 - +0.1 160,198 - -0.5 160,211 - +0.9 160,242 + +0.1 160,271 + -0.0 160,275 + +0.4 160,276 - +0.7 160,287 - -0.9 160,355 + -1.9 160,355 + -1.1 160,356 - +0.4 160,359 + -0.0 160,360 - +0.6 160,458 - -0.7 160,577 + -2.4 160,577 + -0.0 160,578 - -0.9 160,596 + -1.3 160,597 - +0.4 160,597 - +0.6 160,601 - -0.9 160,620 - -0.5 160,641 - -0.7 160,641 - -1.6 160,641 - -1.2 160,752 + BACOVA_03815 0.14 +1.0 160,761 - BACOVA_03815 0.15 -0.1 160,761 - BACOVA_03815 0.15 +2.0 160,815 - BACOVA_03815 0.17 +0.7 160,821 + BACOVA_03815 0.18 -0.6 160,822 - BACOVA_03815 0.18 -0.2 160,867 + BACOVA_03815 0.20 -0.2 160,867 + BACOVA_03815 0.20 -0.2 160,876 + BACOVA_03815 0.20 +0.1 160,877 - BACOVA_03815 0.20 -0.9 160,897 + BACOVA_03815 0.21 +0.0 160,935 - BACOVA_03815 0.23 +1.0 160,939 - BACOVA_03815 0.23 -1.9 161,075 + BACOVA_03815 0.29 -0.4 161,094 + BACOVA_03815 0.30 +0.6 161,112 - BACOVA_03815 0.31 -0.2 161,157 + BACOVA_03815 0.33 +1.0 161,252 - BACOVA_03815 0.37 -0.6 161,274 + BACOVA_03815 0.38 -1.9 161,275 - BACOVA_03815 0.38 +0.3 161,275 - BACOVA_03815 0.38 +0.5 161,275 - BACOVA_03815 0.38 +1.0 161,354 + BACOVA_03815 0.42 -0.4 161,360 + BACOVA_03815 0.42 +0.4 161,432 + BACOVA_03815 0.45 +1.4 161,433 - BACOVA_03815 0.45 +0.1 161,433 - BACOVA_03815 0.45 -0.4 161,630 - BACOVA_03815 0.55 +0.1 161,660 + BACOVA_03815 0.56 -1.5 161,758 - BACOVA_03815 0.60 -1.7 161,758 - BACOVA_03815 0.60 -0.0 161,760 - BACOVA_03815 0.60 -0.0 161,809 - BACOVA_03815 0.63 +1.0 161,838 + BACOVA_03815 0.64 -1.2 161,839 - BACOVA_03815 0.64 -1.5 161,844 + BACOVA_03815 0.64 -0.3 161,845 - BACOVA_03815 0.64 -0.0 161,856 + BACOVA_03815 0.65 +0.6 161,889 + BACOVA_03815 0.66 -1.0 161,968 + BACOVA_03815 0.70 +0.4 161,968 + BACOVA_03815 0.70 +1.6 161,968 + BACOVA_03815 0.70 +0.6 161,969 - BACOVA_03815 0.70 -0.5 161,969 - BACOVA_03815 0.70 +1.0 161,999 + BACOVA_03815 0.71 +0.6 161,999 + BACOVA_03815 0.71 -0.5 162,000 - BACOVA_03815 0.71 -1.5 162,019 - BACOVA_03815 0.72 +0.0 162,108 + BACOVA_03815 0.76 +1.1 162,159 + BACOVA_03815 0.79 +0.7 162,247 + BACOVA_03815 0.83 -1.2 162,250 + BACOVA_03815 0.83 +0.6 162,251 - BACOVA_03815 0.83 +0.7 162,254 - BACOVA_03815 0.83 -1.0 162,284 - BACOVA_03815 0.84 +2.0 162,345 + BACOVA_03815 0.87 -0.3 162,348 - BACOVA_03815 0.87 -1.6 162,404 + BACOVA_03815 0.90 +0.6 162,405 - BACOVA_03815 0.90 +0.6 162,438 + -1.1 162,442 - +1.2 162,442 - -1.7 162,460 + +0.1 162,460 + +0.5 162,463 - -0.4 162,465 - +0.8 162,530 - -2.0 162,614 + +0.6 162,636 + -0.9 162,654 - -1.1 162,654 - +0.1 162,674 - -0.8 162,695 + +1.5 162,696 - -0.4 162,696 - +1.5 162,744 + +0.3 162,744 + -1.5 162,745 - BACOVA_03816 0.10 +0.5 162,777 - BACOVA_03816 0.19 -0.5 162,777 - BACOVA_03816 0.19 +1.0 162,786 - BACOVA_03816 0.22 +0.1 162,809 + BACOVA_03816 0.28 -0.6 162,810 - BACOVA_03816 0.28 +0.2 162,869 - BACOVA_03816 0.45 +0.3 163,018 - BACOVA_03816 0.87 -2.4 163,022 - BACOVA_03816 0.88 +1.0 163,034 + -0.4 163,035 + -1.5 163,042 - -0.4 163,101 - -0.0 163,141 - +0.6 163,182 - -1.0 163,209 + -0.2 163,209 + -1.1 163,210 - -0.4 163,215 - -0.0 163,229 - +0.1 163,347 - BACOVA_03817 0.13 -0.9 163,429 + BACOVA_03817 0.18 +0.0 163,508 - BACOVA_03817 0.23 -0.1 163,531 + BACOVA_03817 0.25 -0.0 163,557 - BACOVA_03817 0.26 -1.2 163,615 + BACOVA_03817 0.30 -2.2 163,615 + BACOVA_03817 0.30 -0.4 163,615 + BACOVA_03817 0.30 -0.9 163,619 + BACOVA_03817 0.30 -1.1
Or see this region's nucleotide sequence