Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03218

Experiment: Lentilan from mushroom 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03217 and BACOVA_03218 are separated by 199 nucleotidesBACOVA_03218 and BACOVA_03219 are separated by 25 nucleotides BACOVA_03217: BACOVA_03217 - putative DNA-binding protein, at 304,828 to 305,436 _03217 BACOVA_03218: BACOVA_03218 - hypothetical protein, at 305,636 to 305,992 _03218 BACOVA_03219: BACOVA_03219 - VirE N-terminal domain protein, at 306,018 to 307,919 _03219 Position (kb) 305 306Strain fitness (log2 ratio) -2 -1 0 1at 304.645 kb on - strandat 304.653 kb on - strandat 304.678 kb on + strandat 304.678 kb on + strandat 304.682 kb on - strandat 304.691 kb on - strandat 304.714 kb on - strandat 304.733 kb on + strandat 304.787 kb on + strandat 304.787 kb on + strandat 304.798 kb on - strandat 304.892 kb on - strand, within BACOVA_03217at 304.892 kb on - strand, within BACOVA_03217at 304.942 kb on + strand, within BACOVA_03217at 304.959 kb on + strand, within BACOVA_03217at 304.960 kb on - strand, within BACOVA_03217at 304.960 kb on - strand, within BACOVA_03217at 304.961 kb on + strand, within BACOVA_03217at 304.962 kb on - strand, within BACOVA_03217at 305.119 kb on + strand, within BACOVA_03217at 305.149 kb on + strand, within BACOVA_03217at 305.150 kb on - strand, within BACOVA_03217at 305.150 kb on - strand, within BACOVA_03217at 305.253 kb on + strand, within BACOVA_03217at 305.432 kb on + strandat 305.432 kb on + strandat 305.445 kb on + strandat 305.445 kb on + strandat 305.510 kb on + strandat 305.524 kb on - strandat 305.580 kb on + strandat 305.581 kb on - strandat 305.600 kb on + strandat 305.600 kb on + strandat 305.603 kb on - strandat 305.718 kb on + strand, within BACOVA_03218at 305.719 kb on - strand, within BACOVA_03218at 305.741 kb on - strand, within BACOVA_03218at 305.795 kb on - strand, within BACOVA_03218at 305.821 kb on - strand, within BACOVA_03218at 305.848 kb on + strand, within BACOVA_03218at 305.969 kb on + strandat 305.969 kb on + strandat 306.002 kb on + strandat 306.003 kb on - strandat 306.003 kb on - strandat 306.003 kb on - strandat 306.041 kb on + strandat 306.069 kb on + strandat 306.069 kb on + strandat 306.080 kb on - strandat 306.130 kb on + strandat 306.162 kb on + strandat 306.174 kb on - strandat 306.203 kb on - strandat 306.280 kb on - strand, within BACOVA_03219at 306.370 kb on - strand, within BACOVA_03219at 306.412 kb on - strand, within BACOVA_03219at 306.412 kb on - strand, within BACOVA_03219at 306.505 kb on - strand, within BACOVA_03219at 306.605 kb on - strand, within BACOVA_03219at 306.605 kb on - strand, within BACOVA_03219at 306.607 kb on + strand, within BACOVA_03219at 306.607 kb on + strand, within BACOVA_03219at 306.809 kb on + strand, within BACOVA_03219at 306.839 kb on + strand, within BACOVA_03219at 306.840 kb on - strand, within BACOVA_03219at 306.840 kb on - strand, within BACOVA_03219at 306.840 kb on - strand, within BACOVA_03219at 306.840 kb on - strand, within BACOVA_03219at 306.942 kb on + strand, within BACOVA_03219at 306.943 kb on - strand, within BACOVA_03219at 306.973 kb on + strand, within BACOVA_03219at 306.974 kb on - strand, within BACOVA_03219

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Per-strain Table

Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C)
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304,645 - +0.3
304,653 - -1.4
304,678 + -0.1
304,678 + -0.7
304,682 - -1.1
304,691 - -0.9
304,714 - +0.2
304,733 + -0.5
304,787 + -0.2
304,787 + +0.7
304,798 - +0.9
304,892 - BACOVA_03217 0.11 +0.3
304,892 - BACOVA_03217 0.11 -1.1
304,942 + BACOVA_03217 0.19 -0.6
304,959 + BACOVA_03217 0.22 -0.1
304,960 - BACOVA_03217 0.22 -0.0
304,960 - BACOVA_03217 0.22 +0.1
304,961 + BACOVA_03217 0.22 -1.2
304,962 - BACOVA_03217 0.22 -0.5
305,119 + BACOVA_03217 0.48 +0.3
305,149 + BACOVA_03217 0.53 +1.2
305,150 - BACOVA_03217 0.53 -0.0
305,150 - BACOVA_03217 0.53 -0.3
305,253 + BACOVA_03217 0.70 +0.2
305,432 + -0.2
305,432 + -1.3
305,445 + +0.4
305,445 + -0.5
305,510 + -0.7
305,524 - -0.1
305,580 + -0.3
305,581 - -0.4
305,600 + -0.7
305,600 + +0.4
305,603 - +0.5
305,718 + BACOVA_03218 0.23 -0.1
305,719 - BACOVA_03218 0.23 +0.2
305,741 - BACOVA_03218 0.29 -0.1
305,795 - BACOVA_03218 0.45 +0.8
305,821 - BACOVA_03218 0.52 -0.7
305,848 + BACOVA_03218 0.59 -0.1
305,969 + -1.1
305,969 + +1.3
306,002 + +0.1
306,003 - -0.1
306,003 - -0.5
306,003 - -0.7
306,041 + -0.3
306,069 + +0.3
306,069 + +0.1
306,080 - +0.6
306,130 + -0.8
306,162 + -0.1
306,174 - +0.6
306,203 - -1.4
306,280 - BACOVA_03219 0.14 -0.3
306,370 - BACOVA_03219 0.19 +0.0
306,412 - BACOVA_03219 0.21 -0.7
306,412 - BACOVA_03219 0.21 -1.5
306,505 - BACOVA_03219 0.26 -0.1
306,605 - BACOVA_03219 0.31 -0.3
306,605 - BACOVA_03219 0.31 +0.4
306,607 + BACOVA_03219 0.31 -0.4
306,607 + BACOVA_03219 0.31 -1.8
306,809 + BACOVA_03219 0.42 -0.5
306,839 + BACOVA_03219 0.43 -1.3
306,840 - BACOVA_03219 0.43 -0.6
306,840 - BACOVA_03219 0.43 -0.1
306,840 - BACOVA_03219 0.43 +0.3
306,840 - BACOVA_03219 0.43 +0.5
306,942 + BACOVA_03219 0.49 +1.4
306,943 - BACOVA_03219 0.49 +0.9
306,973 + BACOVA_03219 0.50 -0.5
306,974 - BACOVA_03219 0.50 +0.6

Or see this region's nucleotide sequence