Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00618

Experiment: Lentilan from mushroom 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00616 and BACOVA_00617 are separated by 77 nucleotidesBACOVA_00617 and BACOVA_00618 are separated by 90 nucleotidesBACOVA_00618 and BACOVA_00619 are separated by 57 nucleotidesBACOVA_00619 and BACOVA_00620 are separated by 62 nucleotides BACOVA_00616: BACOVA_00616 - hypothetical protein, at 54,515 to 55,138 _00616 BACOVA_00617: BACOVA_00617 - hypothetical protein, at 55,216 to 55,617 _00617 BACOVA_00618: BACOVA_00618 - clostripain family, at 55,708 to 56,898 _00618 BACOVA_00619: BACOVA_00619 - RNA polymerase sigma factor, sigma-70 family, at 56,956 to 57,501 _00619 BACOVA_00620: BACOVA_00620 - sigma factor regulatory protein, FecR/PupR family, at 57,564 to 58,736 _00620 Position (kb) 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 54.773 kb on + strand, within BACOVA_00616at 54.773 kb on + strand, within BACOVA_00616at 54.774 kb on - strand, within BACOVA_00616at 54.809 kb on - strand, within BACOVA_00616at 54.847 kb on + strand, within BACOVA_00616at 54.848 kb on - strand, within BACOVA_00616at 54.851 kb on + strand, within BACOVA_00616at 54.851 kb on + strand, within BACOVA_00616at 54.852 kb on - strand, within BACOVA_00616at 54.872 kb on + strand, within BACOVA_00616at 54.872 kb on + strand, within BACOVA_00616at 54.894 kb on - strand, within BACOVA_00616at 54.920 kb on + strand, within BACOVA_00616at 54.927 kb on + strand, within BACOVA_00616at 54.953 kb on - strand, within BACOVA_00616at 54.969 kb on - strand, within BACOVA_00616at 54.970 kb on + strand, within BACOVA_00616at 54.971 kb on - strand, within BACOVA_00616at 55.014 kb on - strand, within BACOVA_00616at 55.014 kb on - strand, within BACOVA_00616at 55.014 kb on - strand, within BACOVA_00616at 55.056 kb on + strand, within BACOVA_00616at 55.130 kb on + strandat 55.131 kb on - strandat 55.150 kb on + strandat 55.150 kb on + strandat 55.163 kb on + strandat 55.164 kb on - strandat 55.164 kb on - strandat 55.169 kb on + strandat 55.170 kb on - strandat 55.208 kb on + strandat 55.209 kb on - strandat 55.209 kb on - strandat 55.211 kb on - strandat 55.215 kb on + strandat 55.215 kb on + strandat 55.306 kb on + strand, within BACOVA_00617at 55.339 kb on - strand, within BACOVA_00617at 55.343 kb on + strand, within BACOVA_00617at 55.343 kb on + strand, within BACOVA_00617at 55.344 kb on - strand, within BACOVA_00617at 55.344 kb on - strand, within BACOVA_00617at 55.368 kb on - strand, within BACOVA_00617at 55.370 kb on + strand, within BACOVA_00617at 55.370 kb on + strand, within BACOVA_00617at 55.371 kb on - strand, within BACOVA_00617at 55.420 kb on + strand, within BACOVA_00617at 55.421 kb on - strand, within BACOVA_00617at 55.422 kb on + strand, within BACOVA_00617at 55.423 kb on - strand, within BACOVA_00617at 55.426 kb on + strand, within BACOVA_00617at 55.470 kb on + strand, within BACOVA_00617at 55.473 kb on + strand, within BACOVA_00617at 55.473 kb on + strand, within BACOVA_00617at 55.474 kb on - strand, within BACOVA_00617at 55.474 kb on - strand, within BACOVA_00617at 55.474 kb on - strand, within BACOVA_00617at 55.480 kb on - strand, within BACOVA_00617at 55.487 kb on - strand, within BACOVA_00617at 55.544 kb on - strand, within BACOVA_00617at 55.555 kb on - strand, within BACOVA_00617at 55.618 kb on + strandat 55.629 kb on + strandat 55.629 kb on + strandat 55.642 kb on + strandat 55.677 kb on + strandat 55.690 kb on + strandat 55.724 kb on + strandat 55.750 kb on - strandat 55.803 kb on + strandat 55.803 kb on + strandat 55.804 kb on - strandat 55.804 kb on - strandat 55.816 kb on + strandat 55.816 kb on + strandat 55.900 kb on - strand, within BACOVA_00618at 55.906 kb on + strand, within BACOVA_00618at 55.907 kb on - strand, within BACOVA_00618at 55.921 kb on + strand, within BACOVA_00618at 55.994 kb on + strand, within BACOVA_00618at 56.005 kb on + strand, within BACOVA_00618at 56.006 kb on - strand, within BACOVA_00618at 56.024 kb on + strand, within BACOVA_00618at 56.087 kb on - strand, within BACOVA_00618at 56.196 kb on - strand, within BACOVA_00618at 56.253 kb on + strand, within BACOVA_00618at 56.253 kb on + strand, within BACOVA_00618at 56.299 kb on + strand, within BACOVA_00618at 56.299 kb on + strand, within BACOVA_00618at 56.303 kb on + strand, within BACOVA_00618at 56.304 kb on - strand, within BACOVA_00618at 56.306 kb on + strand, within BACOVA_00618at 56.306 kb on + strand, within BACOVA_00618at 56.306 kb on + strand, within BACOVA_00618at 56.306 kb on + strand, within BACOVA_00618at 56.306 kb on + strand, within BACOVA_00618at 56.307 kb on - strand, within BACOVA_00618at 56.354 kb on + strand, within BACOVA_00618at 56.377 kb on - strand, within BACOVA_00618at 56.396 kb on + strand, within BACOVA_00618at 56.396 kb on + strand, within BACOVA_00618at 56.437 kb on + strand, within BACOVA_00618at 56.458 kb on - strand, within BACOVA_00618at 56.458 kb on - strand, within BACOVA_00618at 56.458 kb on - strand, within BACOVA_00618at 56.468 kb on + strand, within BACOVA_00618at 56.544 kb on + strand, within BACOVA_00618at 56.544 kb on + strand, within BACOVA_00618at 56.563 kb on + strand, within BACOVA_00618at 56.569 kb on - strand, within BACOVA_00618at 56.600 kb on + strand, within BACOVA_00618at 56.601 kb on - strand, within BACOVA_00618at 56.609 kb on - strand, within BACOVA_00618at 56.630 kb on - strand, within BACOVA_00618at 56.630 kb on - strand, within BACOVA_00618at 56.633 kb on - strand, within BACOVA_00618at 56.655 kb on - strand, within BACOVA_00618at 56.704 kb on + strand, within BACOVA_00618at 56.704 kb on + strand, within BACOVA_00618at 56.734 kb on - strand, within BACOVA_00618at 56.734 kb on - strand, within BACOVA_00618at 56.743 kb on - strand, within BACOVA_00618at 56.796 kb on + strandat 56.796 kb on + strandat 56.797 kb on - strandat 56.800 kb on + strandat 56.801 kb on - strandat 56.805 kb on - strandat 56.818 kb on + strandat 56.831 kb on + strandat 56.832 kb on - strandat 56.832 kb on - strandat 56.856 kb on - strandat 56.856 kb on - strandat 56.864 kb on - strandat 56.864 kb on - strandat 56.899 kb on + strandat 56.900 kb on - strandat 56.903 kb on + strandat 56.921 kb on + strandat 56.922 kb on - strandat 56.922 kb on - strandat 56.936 kb on + strandat 56.952 kb on + strandat 56.952 kb on + strandat 56.953 kb on - strandat 56.965 kb on - strandat 56.965 kb on - strandat 56.975 kb on + strandat 56.976 kb on - strandat 56.976 kb on - strandat 56.977 kb on + strandat 56.979 kb on + strandat 56.979 kb on + strandat 56.980 kb on - strandat 56.980 kb on - strandat 56.980 kb on - strandat 56.980 kb on - strandat 56.989 kb on + strandat 57.171 kb on + strand, within BACOVA_00619at 57.220 kb on + strand, within BACOVA_00619at 57.221 kb on - strand, within BACOVA_00619at 57.221 kb on - strand, within BACOVA_00619at 57.221 kb on - strand, within BACOVA_00619at 57.223 kb on - strand, within BACOVA_00619at 57.258 kb on - strand, within BACOVA_00619at 57.342 kb on - strand, within BACOVA_00619at 57.399 kb on - strand, within BACOVA_00619at 57.500 kb on - strandat 57.730 kb on + strand, within BACOVA_00620at 57.731 kb on - strand, within BACOVA_00620at 57.731 kb on - strand, within BACOVA_00620at 57.791 kb on + strand, within BACOVA_00620at 57.791 kb on + strand, within BACOVA_00620at 57.794 kb on - strand, within BACOVA_00620at 57.818 kb on + strand, within BACOVA_00620at 57.838 kb on + strand, within BACOVA_00620at 57.838 kb on + strand, within BACOVA_00620at 57.839 kb on - strand, within BACOVA_00620at 57.842 kb on + strand, within BACOVA_00620at 57.842 kb on + strand, within BACOVA_00620at 57.843 kb on - strand, within BACOVA_00620at 57.869 kb on - strand, within BACOVA_00620at 57.869 kb on - strand, within BACOVA_00620at 57.871 kb on + strand, within BACOVA_00620at 57.872 kb on - strand, within BACOVA_00620at 57.875 kb on - strand, within BACOVA_00620at 57.875 kb on - strand, within BACOVA_00620at 57.875 kb on - strand, within BACOVA_00620at 57.875 kb on - strand, within BACOVA_00620at 57.875 kb on - strand, within BACOVA_00620

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Per-strain Table

Position Strand Gene LocusTag Fraction Lentilan from mushroom 2.5 mg/mL (C)
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54,773 + BACOVA_00616 0.41 -0.5
54,773 + BACOVA_00616 0.41 -0.7
54,774 - BACOVA_00616 0.42 -0.9
54,809 - BACOVA_00616 0.47 +0.4
54,847 + BACOVA_00616 0.53 -0.9
54,848 - BACOVA_00616 0.53 -0.2
54,851 + BACOVA_00616 0.54 -0.4
54,851 + BACOVA_00616 0.54 +0.9
54,852 - BACOVA_00616 0.54 +0.8
54,872 + BACOVA_00616 0.57 +0.1
54,872 + BACOVA_00616 0.57 -0.2
54,894 - BACOVA_00616 0.61 -0.0
54,920 + BACOVA_00616 0.65 +0.5
54,927 + BACOVA_00616 0.66 -0.5
54,953 - BACOVA_00616 0.70 +0.5
54,969 - BACOVA_00616 0.73 +0.5
54,970 + BACOVA_00616 0.73 +0.1
54,971 - BACOVA_00616 0.73 -0.0
55,014 - BACOVA_00616 0.80 +0.7
55,014 - BACOVA_00616 0.80 -0.3
55,014 - BACOVA_00616 0.80 -0.4
55,056 + BACOVA_00616 0.87 +0.2
55,130 + -1.0
55,131 - -0.1
55,150 + -1.3
55,150 + +0.8
55,163 + -1.3
55,164 - -1.2
55,164 - -3.0
55,169 + +0.2
55,170 - +0.8
55,208 + -0.0
55,209 - +0.8
55,209 - -0.4
55,211 - -0.8
55,215 + -0.6
55,215 + -2.3
55,306 + BACOVA_00617 0.22 -2.2
55,339 - BACOVA_00617 0.31 -0.6
55,343 + BACOVA_00617 0.32 +0.1
55,343 + BACOVA_00617 0.32 +0.8
55,344 - BACOVA_00617 0.32 +0.8
55,344 - BACOVA_00617 0.32 -0.5
55,368 - BACOVA_00617 0.38 +0.3
55,370 + BACOVA_00617 0.38 -0.9
55,370 + BACOVA_00617 0.38 -1.1
55,371 - BACOVA_00617 0.39 +1.2
55,420 + BACOVA_00617 0.51 +1.2
55,421 - BACOVA_00617 0.51 -1.4
55,422 + BACOVA_00617 0.51 -0.5
55,423 - BACOVA_00617 0.51 -0.1
55,426 + BACOVA_00617 0.52 +0.3
55,470 + BACOVA_00617 0.63 -0.8
55,473 + BACOVA_00617 0.64 -0.9
55,473 + BACOVA_00617 0.64 -0.8
55,474 - BACOVA_00617 0.64 -0.0
55,474 - BACOVA_00617 0.64 +0.3
55,474 - BACOVA_00617 0.64 +0.7
55,480 - BACOVA_00617 0.66 +0.6
55,487 - BACOVA_00617 0.67 -1.4
55,544 - BACOVA_00617 0.82 +0.6
55,555 - BACOVA_00617 0.84 -0.6
55,618 + -0.6
55,629 + +0.1
55,629 + -0.5
55,642 + -0.0
55,677 + -1.5
55,690 + -1.3
55,724 + +0.5
55,750 - -0.6
55,803 + +0.1
55,803 + -0.2
55,804 - -1.3
55,804 - +0.7
55,816 + -0.6
55,816 + -0.2
55,900 - BACOVA_00618 0.16 -0.9
55,906 + BACOVA_00618 0.17 -0.0
55,907 - BACOVA_00618 0.17 +0.2
55,921 + BACOVA_00618 0.18 +2.3
55,994 + BACOVA_00618 0.24 -1.9
56,005 + BACOVA_00618 0.25 -1.5
56,006 - BACOVA_00618 0.25 -1.2
56,024 + BACOVA_00618 0.27 +0.4
56,087 - BACOVA_00618 0.32 -0.7
56,196 - BACOVA_00618 0.41 -0.6
56,253 + BACOVA_00618 0.46 +0.2
56,253 + BACOVA_00618 0.46 -1.0
56,299 + BACOVA_00618 0.50 +0.7
56,299 + BACOVA_00618 0.50 +0.2
56,303 + BACOVA_00618 0.50 -1.0
56,304 - BACOVA_00618 0.50 +1.2
56,306 + BACOVA_00618 0.50 +1.1
56,306 + BACOVA_00618 0.50 +0.8
56,306 + BACOVA_00618 0.50 +0.2
56,306 + BACOVA_00618 0.50 -0.1
56,306 + BACOVA_00618 0.50 -0.0
56,307 - BACOVA_00618 0.50 +0.3
56,354 + BACOVA_00618 0.54 -0.7
56,377 - BACOVA_00618 0.56 -1.5
56,396 + BACOVA_00618 0.58 -0.1
56,396 + BACOVA_00618 0.58 -0.2
56,437 + BACOVA_00618 0.61 -2.0
56,458 - BACOVA_00618 0.63 +0.3
56,458 - BACOVA_00618 0.63 -0.3
56,458 - BACOVA_00618 0.63 +1.5
56,468 + BACOVA_00618 0.64 -1.1
56,544 + BACOVA_00618 0.70 +0.7
56,544 + BACOVA_00618 0.70 +0.4
56,563 + BACOVA_00618 0.72 +0.4
56,569 - BACOVA_00618 0.72 +0.3
56,600 + BACOVA_00618 0.75 +0.4
56,601 - BACOVA_00618 0.75 +0.3
56,609 - BACOVA_00618 0.76 +0.1
56,630 - BACOVA_00618 0.77 -1.0
56,630 - BACOVA_00618 0.77 +0.7
56,633 - BACOVA_00618 0.78 -1.4
56,655 - BACOVA_00618 0.80 -1.4
56,704 + BACOVA_00618 0.84 -0.2
56,704 + BACOVA_00618 0.84 -1.0
56,734 - BACOVA_00618 0.86 -1.2
56,734 - BACOVA_00618 0.86 -0.3
56,743 - BACOVA_00618 0.87 +0.7
56,796 + +0.4
56,796 + +0.7
56,797 - +1.1
56,800 + -3.1
56,801 - -1.5
56,805 - +0.6
56,818 + -1.7
56,831 + +0.4
56,832 - -0.1
56,832 - +1.7
56,856 - +0.0
56,856 - -0.5
56,864 - -0.4
56,864 - -0.2
56,899 + -0.6
56,900 - -0.8
56,903 + -0.3
56,921 + -0.3
56,922 - -1.5
56,922 - +0.1
56,936 + +0.6
56,952 + -1.0
56,952 + +0.4
56,953 - +0.1
56,965 - -1.3
56,965 - -0.3
56,975 + -0.6
56,976 - +0.2
56,976 - -1.2
56,977 + +1.5
56,979 + +0.4
56,979 + -1.0
56,980 - +0.9
56,980 - -0.8
56,980 - +0.3
56,980 - +0.7
56,989 + -0.6
57,171 + BACOVA_00619 0.39 +0.9
57,220 + BACOVA_00619 0.48 +0.4
57,221 - BACOVA_00619 0.49 +0.5
57,221 - BACOVA_00619 0.49 +0.1
57,221 - BACOVA_00619 0.49 -0.5
57,223 - BACOVA_00619 0.49 +0.9
57,258 - BACOVA_00619 0.55 -1.7
57,342 - BACOVA_00619 0.71 -0.0
57,399 - BACOVA_00619 0.81 +0.9
57,500 - -3.6
57,730 + BACOVA_00620 0.14 +0.0
57,731 - BACOVA_00620 0.14 -1.2
57,731 - BACOVA_00620 0.14 +0.5
57,791 + BACOVA_00620 0.19 -0.0
57,791 + BACOVA_00620 0.19 -1.6
57,794 - BACOVA_00620 0.20 +0.3
57,818 + BACOVA_00620 0.22 -1.6
57,838 + BACOVA_00620 0.23 -0.0
57,838 + BACOVA_00620 0.23 -1.3
57,839 - BACOVA_00620 0.23 +0.4
57,842 + BACOVA_00620 0.24 +0.2
57,842 + BACOVA_00620 0.24 +0.3
57,843 - BACOVA_00620 0.24 +0.1
57,869 - BACOVA_00620 0.26 +0.8
57,869 - BACOVA_00620 0.26 -0.5
57,871 + BACOVA_00620 0.26 -1.1
57,872 - BACOVA_00620 0.26 -0.0
57,875 - BACOVA_00620 0.27 +1.6
57,875 - BACOVA_00620 0.27 -0.6
57,875 - BACOVA_00620 0.27 -0.3
57,875 - BACOVA_00620 0.27 -3.1
57,875 - BACOVA_00620 0.27 +0.6

Or see this region's nucleotide sequence