Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02679

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02677 and MPMX26_02678 are separated by 37 nucleotidesMPMX26_02678 and MPMX26_02679 are separated by 154 nucleotidesMPMX26_02679 and MPMX26_02680 are separated by 77 nucleotidesMPMX26_02680 and MPMX26_02681 are separated by 234 nucleotidesMPMX26_02681 and MPMX26_02682 are separated by 74 nucleotidesMPMX26_02682 and MPMX26_02683 are separated by 14 nucleotidesMPMX26_02683 and MPMX26_02684 are separated by 231 nucleotides MPMX26_02677: MPMX26_02677 - putative protein YcgM, at 2,772,683 to 2,773,321 _02677 MPMX26_02678: MPMX26_02678 - hypothetical protein, at 2,773,359 to 2,773,856 _02678 MPMX26_02679: MPMX26_02679 - hypothetical protein, at 2,774,011 to 2,775,318 _02679 MPMX26_02680: MPMX26_02680 - tRNA-Arg, at 2,775,396 to 2,775,472 _02680 MPMX26_02681: MPMX26_02681 - tRNA-Arg, at 2,775,707 to 2,775,783 _02681 MPMX26_02682: MPMX26_02682 - tRNA-Arg, at 2,775,858 to 2,775,934 _02682 MPMX26_02683: MPMX26_02683 - tRNA-Ser, at 2,775,949 to 2,776,038 _02683 MPMX26_02684: MPMX26_02684 - Ribonuclease R, at 2,776,270 to 2,778,714 _02684 Position (kb) 2774 2775 2776Strain fitness (log2 ratio) -2 -1 0 1at 2773.015 kb on - strand, within MPMX26_02677at 2773.021 kb on - strand, within MPMX26_02677at 2773.021 kb on - strand, within MPMX26_02677at 2773.022 kb on - strand, within MPMX26_02677at 2773.056 kb on - strand, within MPMX26_02677at 2773.144 kb on - strand, within MPMX26_02677at 2773.155 kb on - strand, within MPMX26_02677at 2773.155 kb on - strand, within MPMX26_02677at 2773.197 kb on - strand, within MPMX26_02677at 2773.216 kb on - strand, within MPMX26_02677at 2773.236 kb on - strand, within MPMX26_02677at 2773.236 kb on - strand, within MPMX26_02677at 2773.246 kb on - strand, within MPMX26_02677at 2773.246 kb on - strand, within MPMX26_02677at 2773.246 kb on - strand, within MPMX26_02677at 2773.246 kb on - strand, within MPMX26_02677at 2773.250 kb on - strand, within MPMX26_02677at 2773.250 kb on - strand, within MPMX26_02677at 2773.261 kb on - strandat 2773.261 kb on - strandat 2773.261 kb on - strandat 2773.261 kb on - strandat 2773.279 kb on - strandat 2773.288 kb on - strandat 2773.433 kb on - strand, within MPMX26_02678at 2773.490 kb on - strand, within MPMX26_02678at 2773.490 kb on - strand, within MPMX26_02678at 2773.490 kb on - strand, within MPMX26_02678at 2773.498 kb on - strand, within MPMX26_02678at 2773.538 kb on - strand, within MPMX26_02678at 2773.540 kb on - strand, within MPMX26_02678at 2773.540 kb on - strand, within MPMX26_02678at 2773.540 kb on - strand, within MPMX26_02678at 2773.540 kb on - strand, within MPMX26_02678at 2773.540 kb on - strand, within MPMX26_02678at 2773.545 kb on - strand, within MPMX26_02678at 2773.561 kb on - strand, within MPMX26_02678at 2773.587 kb on - strand, within MPMX26_02678at 2773.608 kb on - strand, within MPMX26_02678at 2773.638 kb on - strand, within MPMX26_02678at 2773.705 kb on - strand, within MPMX26_02678at 2773.729 kb on - strand, within MPMX26_02678at 2773.729 kb on - strand, within MPMX26_02678at 2773.737 kb on - strand, within MPMX26_02678at 2773.739 kb on - strand, within MPMX26_02678at 2773.742 kb on - strand, within MPMX26_02678at 2773.742 kb on - strand, within MPMX26_02678at 2773.753 kb on - strand, within MPMX26_02678at 2773.819 kb on - strandat 2773.819 kb on - strandat 2773.838 kb on - strandat 2775.168 kb on - strand, within MPMX26_02679at 2775.385 kb on - strandat 2775.419 kb on - strand, within MPMX26_02680at 2775.483 kb on - strandat 2775.707 kb on - strandat 2775.707 kb on - strandat 2775.716 kb on - strand, within MPMX26_02681at 2775.730 kb on - strand, within MPMX26_02681at 2775.849 kb on - strandat 2775.849 kb on - strandat 2776.251 kb on + strandat 2776.259 kb on - strandat 2776.265 kb on + strandat 2776.278 kb on + strandat 2776.278 kb on + strandat 2776.283 kb on + strandat 2776.291 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
2,773,015 - MPMX26_02677 0.52 +0.3
2,773,021 - MPMX26_02677 0.53 +0.3
2,773,021 - MPMX26_02677 0.53 +0.2
2,773,022 - MPMX26_02677 0.53 +0.3
2,773,056 - MPMX26_02677 0.58 -0.7
2,773,144 - MPMX26_02677 0.72 +0.1
2,773,155 - MPMX26_02677 0.74 +0.2
2,773,155 - MPMX26_02677 0.74 +0.3
2,773,197 - MPMX26_02677 0.80 -2.7
2,773,216 - MPMX26_02677 0.83 -0.1
2,773,236 - MPMX26_02677 0.87 +0.6
2,773,236 - MPMX26_02677 0.87 -0.2
2,773,246 - MPMX26_02677 0.88 +0.5
2,773,246 - MPMX26_02677 0.88 +0.5
2,773,246 - MPMX26_02677 0.88 +0.1
2,773,246 - MPMX26_02677 0.88 -0.2
2,773,250 - MPMX26_02677 0.89 +0.7
2,773,250 - MPMX26_02677 0.89 +0.4
2,773,261 - -0.0
2,773,261 - -0.3
2,773,261 - +0.2
2,773,261 - -0.2
2,773,279 - -0.0
2,773,288 - -0.4
2,773,433 - MPMX26_02678 0.15 +0.2
2,773,490 - MPMX26_02678 0.26 +0.1
2,773,490 - MPMX26_02678 0.26 -0.1
2,773,490 - MPMX26_02678 0.26 -0.2
2,773,498 - MPMX26_02678 0.28 +1.0
2,773,538 - MPMX26_02678 0.36 +0.4
2,773,540 - MPMX26_02678 0.36 +0.5
2,773,540 - MPMX26_02678 0.36 +0.5
2,773,540 - MPMX26_02678 0.36 +0.4
2,773,540 - MPMX26_02678 0.36 -0.1
2,773,540 - MPMX26_02678 0.36 -1.8
2,773,545 - MPMX26_02678 0.37 +0.0
2,773,561 - MPMX26_02678 0.41 -0.1
2,773,587 - MPMX26_02678 0.46 +0.1
2,773,608 - MPMX26_02678 0.50 -0.1
2,773,638 - MPMX26_02678 0.56 +0.5
2,773,705 - MPMX26_02678 0.69 -0.1
2,773,729 - MPMX26_02678 0.74 -0.5
2,773,729 - MPMX26_02678 0.74 -0.2
2,773,737 - MPMX26_02678 0.76 -0.6
2,773,739 - MPMX26_02678 0.76 -0.5
2,773,742 - MPMX26_02678 0.77 +0.1
2,773,742 - MPMX26_02678 0.77 -0.3
2,773,753 - MPMX26_02678 0.79 -0.3
2,773,819 - +0.1
2,773,819 - -0.1
2,773,838 - -0.5
2,775,168 - MPMX26_02679 0.88 -0.7
2,775,385 - +0.3
2,775,419 - MPMX26_02680 0.30 +0.4
2,775,483 - -0.5
2,775,707 - +0.3
2,775,707 - -0.3
2,775,716 - MPMX26_02681 0.12 +0.2
2,775,730 - MPMX26_02681 0.30 +0.0
2,775,849 - +0.7
2,775,849 - -0.0
2,776,251 + -0.9
2,776,259 - -0.9
2,776,265 + +0.5
2,776,278 + -0.5
2,776,278 + +1.2
2,776,283 + -0.3
2,776,291 - -0.2

Or see this region's nucleotide sequence