Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02591

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02589 and MPMX26_02590 are separated by 7 nucleotidesMPMX26_02590 and MPMX26_02591 are separated by 134 nucleotidesMPMX26_02591 and MPMX26_02592 are separated by 170 nucleotides MPMX26_02589: MPMX26_02589 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,683,120 to 2,684,379 _02589 MPMX26_02590: MPMX26_02590 - Acid stress protein IbaG, at 2,684,387 to 2,684,638 _02590 MPMX26_02591: MPMX26_02591 - Ribosome hibernation promoting factor, at 2,684,773 to 2,685,105 _02591 MPMX26_02592: MPMX26_02592 - RNA polymerase sigma-54 factor, at 2,685,276 to 2,686,721 _02592 Position (kb) 2684 2685 2686Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2684.793 kb on - strandat 2684.997 kb on - strand, within MPMX26_02591at 2685.057 kb on - strand, within MPMX26_02591at 2685.156 kb on - strandat 2685.287 kb on - strandat 2685.296 kb on - strandat 2685.320 kb on - strandat 2685.348 kb on - strandat 2685.350 kb on - strandat 2685.350 kb on - strandat 2685.481 kb on - strand, within MPMX26_02592at 2685.481 kb on - strand, within MPMX26_02592at 2685.488 kb on - strand, within MPMX26_02592at 2685.517 kb on - strand, within MPMX26_02592at 2685.522 kb on - strand, within MPMX26_02592at 2685.532 kb on - strand, within MPMX26_02592at 2685.532 kb on - strand, within MPMX26_02592at 2685.572 kb on - strand, within MPMX26_02592at 2685.572 kb on - strand, within MPMX26_02592at 2685.577 kb on - strand, within MPMX26_02592at 2685.577 kb on - strand, within MPMX26_02592at 2685.577 kb on - strand, within MPMX26_02592at 2685.582 kb on - strand, within MPMX26_02592at 2685.592 kb on - strand, within MPMX26_02592at 2685.592 kb on - strand, within MPMX26_02592at 2685.628 kb on - strand, within MPMX26_02592at 2685.673 kb on - strand, within MPMX26_02592at 2685.675 kb on - strand, within MPMX26_02592at 2685.702 kb on - strand, within MPMX26_02592at 2685.715 kb on - strand, within MPMX26_02592at 2685.749 kb on - strand, within MPMX26_02592at 2685.779 kb on - strand, within MPMX26_02592at 2685.779 kb on - strand, within MPMX26_02592at 2685.779 kb on - strand, within MPMX26_02592at 2685.779 kb on - strand, within MPMX26_02592at 2685.779 kb on - strand, within MPMX26_02592at 2685.861 kb on - strand, within MPMX26_02592at 2685.861 kb on - strand, within MPMX26_02592at 2685.887 kb on - strand, within MPMX26_02592at 2685.887 kb on - strand, within MPMX26_02592at 2685.938 kb on - strand, within MPMX26_02592at 2685.977 kb on - strand, within MPMX26_02592at 2685.977 kb on - strand, within MPMX26_02592at 2685.990 kb on - strand, within MPMX26_02592at 2685.990 kb on - strand, within MPMX26_02592at 2685.990 kb on - strand, within MPMX26_02592at 2685.992 kb on - strand, within MPMX26_02592at 2685.992 kb on - strand, within MPMX26_02592at 2685.992 kb on - strand, within MPMX26_02592at 2685.992 kb on - strand, within MPMX26_02592at 2685.992 kb on - strand, within MPMX26_02592at 2685.992 kb on - strand, within MPMX26_02592at 2685.992 kb on - strand, within MPMX26_02592at 2685.992 kb on - strand, within MPMX26_02592at 2685.992 kb on - strand, within MPMX26_02592at 2686.061 kb on - strand, within MPMX26_02592at 2686.061 kb on - strand, within MPMX26_02592at 2686.075 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592at 2686.091 kb on - strand, within MPMX26_02592

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
2,684,793 - -0.7
2,684,997 - MPMX26_02591 0.67 -0.8
2,685,057 - MPMX26_02591 0.85 +1.5
2,685,156 - -0.9
2,685,287 - -2.4
2,685,296 - -0.2
2,685,320 - -5.2
2,685,348 - -5.6
2,685,350 - -6.8
2,685,350 - -3.6
2,685,481 - MPMX26_02592 0.14 -4.1
2,685,481 - MPMX26_02592 0.14 -5.0
2,685,488 - MPMX26_02592 0.15 -5.0
2,685,517 - MPMX26_02592 0.17 -4.2
2,685,522 - MPMX26_02592 0.17 -4.6
2,685,532 - MPMX26_02592 0.18 -4.3
2,685,532 - MPMX26_02592 0.18 -4.0
2,685,572 - MPMX26_02592 0.20 -4.6
2,685,572 - MPMX26_02592 0.20 -4.2
2,685,577 - MPMX26_02592 0.21 -4.1
2,685,577 - MPMX26_02592 0.21 -4.7
2,685,577 - MPMX26_02592 0.21 -4.8
2,685,582 - MPMX26_02592 0.21 -4.8
2,685,592 - MPMX26_02592 0.22 -5.0
2,685,592 - MPMX26_02592 0.22 -5.3
2,685,628 - MPMX26_02592 0.24 -3.3
2,685,673 - MPMX26_02592 0.27 -5.4
2,685,675 - MPMX26_02592 0.28 -5.6
2,685,702 - MPMX26_02592 0.29 -3.6
2,685,715 - MPMX26_02592 0.30 -3.4
2,685,749 - MPMX26_02592 0.33 -5.1
2,685,779 - MPMX26_02592 0.35 -4.0
2,685,779 - MPMX26_02592 0.35 -5.6
2,685,779 - MPMX26_02592 0.35 -5.7
2,685,779 - MPMX26_02592 0.35 -4.6
2,685,779 - MPMX26_02592 0.35 -4.8
2,685,861 - MPMX26_02592 0.40 -4.1
2,685,861 - MPMX26_02592 0.40 -2.0
2,685,887 - MPMX26_02592 0.42 -5.4
2,685,887 - MPMX26_02592 0.42 -5.7
2,685,938 - MPMX26_02592 0.46 -4.8
2,685,977 - MPMX26_02592 0.48 -2.6
2,685,977 - MPMX26_02592 0.48 -4.2
2,685,990 - MPMX26_02592 0.49 -4.6
2,685,990 - MPMX26_02592 0.49 -4.8
2,685,990 - MPMX26_02592 0.49 -5.8
2,685,992 - MPMX26_02592 0.50 -3.2
2,685,992 - MPMX26_02592 0.50 -5.3
2,685,992 - MPMX26_02592 0.50 -4.3
2,685,992 - MPMX26_02592 0.50 -5.1
2,685,992 - MPMX26_02592 0.50 -5.2
2,685,992 - MPMX26_02592 0.50 -4.6
2,685,992 - MPMX26_02592 0.50 -0.7
2,685,992 - MPMX26_02592 0.50 -4.4
2,685,992 - MPMX26_02592 0.50 -5.1
2,686,061 - MPMX26_02592 0.54 -4.0
2,686,061 - MPMX26_02592 0.54 -1.6
2,686,075 - MPMX26_02592 0.55 -5.3
2,686,091 - MPMX26_02592 0.56 -3.9
2,686,091 - MPMX26_02592 0.56 -4.5
2,686,091 - MPMX26_02592 0.56 -4.5
2,686,091 - MPMX26_02592 0.56 -5.2
2,686,091 - MPMX26_02592 0.56 -2.6
2,686,091 - MPMX26_02592 0.56 -4.5
2,686,091 - MPMX26_02592 0.56 -4.6
2,686,091 - MPMX26_02592 0.56 -5.0
2,686,091 - MPMX26_02592 0.56 -4.9
2,686,091 - MPMX26_02592 0.56 -4.5
2,686,091 - MPMX26_02592 0.56 -3.8
2,686,091 - MPMX26_02592 0.56 -4.6

Or see this region's nucleotide sequence