Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01990

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01989 and MPMX26_01990 are separated by 345 nucleotidesMPMX26_01990 and MPMX26_01991 are separated by 140 nucleotides MPMX26_01989: MPMX26_01989 - NAD/NADP-dependent betaine aldehyde dehydrogenase, at 2,046,814 to 2,048,220 _01989 MPMX26_01990: MPMX26_01990 - p-hydroxyphenylacetate 3-hydroxylase, reductase component, at 2,048,566 to 2,049,501 _01990 MPMX26_01991: MPMX26_01991 - Glutarate-semialdehyde dehydrogenase, at 2,049,642 to 2,051,090 _01991 Position (kb) 2048 2049 2050Strain fitness (log2 ratio) -1 0 1at 2047.939 kb on + strand, within MPMX26_01989at 2048.916 kb on - strand, within MPMX26_01990at 2048.916 kb on - strand, within MPMX26_01990at 2048.916 kb on - strand, within MPMX26_01990at 2048.916 kb on - strand, within MPMX26_01990at 2048.940 kb on - strand, within MPMX26_01990at 2048.980 kb on - strand, within MPMX26_01990at 2049.048 kb on - strand, within MPMX26_01990at 2049.099 kb on - strand, within MPMX26_01990at 2049.100 kb on - strand, within MPMX26_01990at 2049.139 kb on - strand, within MPMX26_01990at 2049.141 kb on - strand, within MPMX26_01990at 2049.141 kb on - strand, within MPMX26_01990at 2049.141 kb on - strand, within MPMX26_01990at 2049.378 kb on - strand, within MPMX26_01990at 2049.678 kb on - strandat 2049.716 kb on - strandat 2049.716 kb on - strandat 2049.716 kb on - strandat 2049.780 kb on - strandat 2049.816 kb on - strand, within MPMX26_01991at 2049.891 kb on - strand, within MPMX26_01991at 2049.930 kb on - strand, within MPMX26_01991at 2049.938 kb on - strand, within MPMX26_01991at 2049.938 kb on - strand, within MPMX26_01991at 2049.939 kb on - strand, within MPMX26_01991at 2049.977 kb on - strand, within MPMX26_01991at 2050.029 kb on - strand, within MPMX26_01991at 2050.029 kb on - strand, within MPMX26_01991at 2050.047 kb on - strand, within MPMX26_01991at 2050.047 kb on - strand, within MPMX26_01991at 2050.112 kb on - strand, within MPMX26_01991at 2050.225 kb on - strand, within MPMX26_01991at 2050.230 kb on - strand, within MPMX26_01991at 2050.235 kb on - strand, within MPMX26_01991at 2050.235 kb on - strand, within MPMX26_01991at 2050.235 kb on - strand, within MPMX26_01991at 2050.281 kb on - strand, within MPMX26_01991at 2050.281 kb on - strand, within MPMX26_01991at 2050.281 kb on - strand, within MPMX26_01991at 2050.281 kb on - strand, within MPMX26_01991at 2050.281 kb on - strand, within MPMX26_01991at 2050.281 kb on - strand, within MPMX26_01991at 2050.286 kb on - strand, within MPMX26_01991at 2050.286 kb on - strand, within MPMX26_01991at 2050.356 kb on - strand, within MPMX26_01991at 2050.421 kb on - strand, within MPMX26_01991at 2050.452 kb on - strand, within MPMX26_01991at 2050.464 kb on - strand, within MPMX26_01991at 2050.464 kb on - strand, within MPMX26_01991at 2050.464 kb on - strand, within MPMX26_01991at 2050.481 kb on - strand, within MPMX26_01991

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,047,939 + MPMX26_01989 0.80 -0.7
2,048,916 - MPMX26_01990 0.37 -0.7
2,048,916 - MPMX26_01990 0.37 -0.1
2,048,916 - MPMX26_01990 0.37 -0.7
2,048,916 - MPMX26_01990 0.37 +1.1
2,048,940 - MPMX26_01990 0.40 +0.7
2,048,980 - MPMX26_01990 0.44 +1.2
2,049,048 - MPMX26_01990 0.51 +0.7
2,049,099 - MPMX26_01990 0.57 +0.0
2,049,100 - MPMX26_01990 0.57 +0.0
2,049,139 - MPMX26_01990 0.61 -0.1
2,049,141 - MPMX26_01990 0.61 -1.1
2,049,141 - MPMX26_01990 0.61 -0.1
2,049,141 - MPMX26_01990 0.61 -0.2
2,049,378 - MPMX26_01990 0.87 +0.2
2,049,678 - -0.0
2,049,716 - -0.4
2,049,716 - +0.6
2,049,716 - +0.4
2,049,780 - +0.9
2,049,816 - MPMX26_01991 0.12 -0.1
2,049,891 - MPMX26_01991 0.17 +0.1
2,049,930 - MPMX26_01991 0.20 +0.4
2,049,938 - MPMX26_01991 0.20 -0.2
2,049,938 - MPMX26_01991 0.20 +0.2
2,049,939 - MPMX26_01991 0.20 +0.1
2,049,977 - MPMX26_01991 0.23 +0.1
2,050,029 - MPMX26_01991 0.27 -0.1
2,050,029 - MPMX26_01991 0.27 -0.0
2,050,047 - MPMX26_01991 0.28 -0.1
2,050,047 - MPMX26_01991 0.28 +0.0
2,050,112 - MPMX26_01991 0.32 +0.5
2,050,225 - MPMX26_01991 0.40 +0.4
2,050,230 - MPMX26_01991 0.41 +0.4
2,050,235 - MPMX26_01991 0.41 -0.0
2,050,235 - MPMX26_01991 0.41 -0.6
2,050,235 - MPMX26_01991 0.41 -0.5
2,050,281 - MPMX26_01991 0.44 +0.0
2,050,281 - MPMX26_01991 0.44 +0.1
2,050,281 - MPMX26_01991 0.44 +0.7
2,050,281 - MPMX26_01991 0.44 +0.3
2,050,281 - MPMX26_01991 0.44 -0.1
2,050,281 - MPMX26_01991 0.44 -0.1
2,050,286 - MPMX26_01991 0.44 -0.6
2,050,286 - MPMX26_01991 0.44 -0.1
2,050,356 - MPMX26_01991 0.49 -0.0
2,050,421 - MPMX26_01991 0.54 -0.2
2,050,452 - MPMX26_01991 0.56 +0.4
2,050,464 - MPMX26_01991 0.57 -0.4
2,050,464 - MPMX26_01991 0.57 -0.8
2,050,464 - MPMX26_01991 0.57 +0.9
2,050,481 - MPMX26_01991 0.58 -0.1

Or see this region's nucleotide sequence