Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01292

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01290 and MPMX26_01291 are separated by 62 nucleotidesMPMX26_01291 and MPMX26_01292 are separated by 199 nucleotidesMPMX26_01292 and MPMX26_01293 overlap by 14 nucleotides MPMX26_01290: MPMX26_01290 - 2-methylcitrate synthase, at 1,365,432 to 1,366,574 _01290 MPMX26_01291: MPMX26_01291 - hypothetical protein, at 1,366,637 to 1,367,272 _01291 MPMX26_01292: MPMX26_01292 - DNA-binding transcriptional regulator NtrC, at 1,367,472 to 1,368,947 _01292 MPMX26_01293: MPMX26_01293 - Sensory histidine kinase/phosphatase NtrB, at 1,368,934 to 1,370,043 _01293 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1366.784 kb on - strand, within MPMX26_01291at 1367.520 kb on - strandat 1367.520 kb on - strandat 1367.520 kb on - strandat 1367.567 kb on - strandat 1367.588 kb on - strandat 1367.639 kb on - strand, within MPMX26_01292at 1367.705 kb on - strand, within MPMX26_01292at 1367.711 kb on - strand, within MPMX26_01292at 1367.768 kb on - strand, within MPMX26_01292at 1368.059 kb on - strand, within MPMX26_01292at 1368.156 kb on - strand, within MPMX26_01292at 1368.183 kb on - strand, within MPMX26_01292at 1368.183 kb on - strand, within MPMX26_01292at 1368.255 kb on - strand, within MPMX26_01292at 1368.255 kb on - strand, within MPMX26_01292at 1368.255 kb on - strand, within MPMX26_01292at 1368.255 kb on - strand, within MPMX26_01292at 1368.276 kb on - strand, within MPMX26_01292at 1368.276 kb on - strand, within MPMX26_01292at 1368.365 kb on - strand, within MPMX26_01292at 1368.428 kb on - strand, within MPMX26_01292at 1368.428 kb on - strand, within MPMX26_01292at 1368.438 kb on - strand, within MPMX26_01292at 1368.473 kb on - strand, within MPMX26_01292at 1368.548 kb on - strand, within MPMX26_01292at 1368.606 kb on - strand, within MPMX26_01292at 1368.617 kb on - strand, within MPMX26_01292at 1368.623 kb on - strand, within MPMX26_01292at 1368.635 kb on - strand, within MPMX26_01292at 1368.642 kb on - strand, within MPMX26_01292at 1368.711 kb on - strand, within MPMX26_01292at 1368.735 kb on - strand, within MPMX26_01292at 1368.735 kb on - strand, within MPMX26_01292at 1368.735 kb on - strand, within MPMX26_01292at 1368.735 kb on - strand, within MPMX26_01292at 1368.743 kb on - strand, within MPMX26_01292at 1368.743 kb on - strand, within MPMX26_01292at 1368.828 kb on - strandat 1368.828 kb on - strandat 1368.828 kb on - strandat 1368.828 kb on - strandat 1368.833 kb on - strandat 1368.833 kb on - strandat 1368.833 kb on - strandat 1368.833 kb on - strandat 1368.837 kb on - strandat 1368.843 kb on - strandat 1368.860 kb on - strandat 1368.875 kb on - strandat 1368.963 kb on - strandat 1368.975 kb on - strandat 1369.006 kb on - strandat 1369.024 kb on - strandat 1369.044 kb on - strandat 1369.044 kb on - strandat 1369.056 kb on - strand, within MPMX26_01293at 1369.056 kb on - strand, within MPMX26_01293at 1369.056 kb on - strand, within MPMX26_01293at 1369.062 kb on - strand, within MPMX26_01293at 1369.089 kb on - strand, within MPMX26_01293at 1369.206 kb on - strand, within MPMX26_01293at 1369.311 kb on - strand, within MPMX26_01293at 1369.347 kb on - strand, within MPMX26_01293at 1369.407 kb on - strand, within MPMX26_01293at 1369.416 kb on - strand, within MPMX26_01293at 1369.613 kb on - strand, within MPMX26_01293at 1369.813 kb on - strand, within MPMX26_01293at 1369.813 kb on - strand, within MPMX26_01293at 1369.932 kb on - strand, within MPMX26_01293

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,366,784 - MPMX26_01291 0.23 +0.1
1,367,520 - -1.3
1,367,520 - -2.4
1,367,520 - -1.8
1,367,567 - -4.6
1,367,588 - -0.8
1,367,639 - MPMX26_01292 0.11 -3.5
1,367,705 - MPMX26_01292 0.16 -4.2
1,367,711 - MPMX26_01292 0.16 -4.1
1,367,768 - MPMX26_01292 0.20 -4.4
1,368,059 - MPMX26_01292 0.40 -3.8
1,368,156 - MPMX26_01292 0.46 -2.5
1,368,183 - MPMX26_01292 0.48 -0.8
1,368,183 - MPMX26_01292 0.48 -3.3
1,368,255 - MPMX26_01292 0.53 -2.4
1,368,255 - MPMX26_01292 0.53 -3.2
1,368,255 - MPMX26_01292 0.53 -2.2
1,368,255 - MPMX26_01292 0.53 -2.8
1,368,276 - MPMX26_01292 0.54 -3.1
1,368,276 - MPMX26_01292 0.54 -4.4
1,368,365 - MPMX26_01292 0.61 -3.4
1,368,428 - MPMX26_01292 0.65 -4.3
1,368,428 - MPMX26_01292 0.65 -3.2
1,368,438 - MPMX26_01292 0.65 -2.6
1,368,473 - MPMX26_01292 0.68 -1.5
1,368,548 - MPMX26_01292 0.73 -3.3
1,368,606 - MPMX26_01292 0.77 -2.9
1,368,617 - MPMX26_01292 0.78 -3.4
1,368,623 - MPMX26_01292 0.78 -3.5
1,368,635 - MPMX26_01292 0.79 -4.0
1,368,642 - MPMX26_01292 0.79 -4.2
1,368,711 - MPMX26_01292 0.84 -4.1
1,368,735 - MPMX26_01292 0.86 -1.7
1,368,735 - MPMX26_01292 0.86 -2.2
1,368,735 - MPMX26_01292 0.86 -3.6
1,368,735 - MPMX26_01292 0.86 -2.6
1,368,743 - MPMX26_01292 0.86 -1.9
1,368,743 - MPMX26_01292 0.86 -3.1
1,368,828 - +0.9
1,368,828 - -1.8
1,368,828 - -2.8
1,368,828 - -1.8
1,368,833 - -4.1
1,368,833 - -3.4
1,368,833 - -2.8
1,368,833 - -3.4
1,368,837 - -4.4
1,368,843 - -1.6
1,368,860 - -3.7
1,368,875 - -3.0
1,368,963 - -1.1
1,368,975 - -0.3
1,369,006 - -1.7
1,369,024 - -0.6
1,369,044 - -3.0
1,369,044 - -2.1
1,369,056 - MPMX26_01293 0.11 -1.9
1,369,056 - MPMX26_01293 0.11 -3.9
1,369,056 - MPMX26_01293 0.11 -2.0
1,369,062 - MPMX26_01293 0.12 -3.2
1,369,089 - MPMX26_01293 0.14 -3.3
1,369,206 - MPMX26_01293 0.25 -3.3
1,369,311 - MPMX26_01293 0.34 -1.8
1,369,347 - MPMX26_01293 0.37 -2.4
1,369,407 - MPMX26_01293 0.43 -2.9
1,369,416 - MPMX26_01293 0.43 -2.0
1,369,613 - MPMX26_01293 0.61 -0.7
1,369,813 - MPMX26_01293 0.79 -1.1
1,369,813 - MPMX26_01293 0.79 -2.0
1,369,932 - MPMX26_01293 0.90 -2.0

Or see this region's nucleotide sequence