Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01001

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_01000 and MPMX26_01001 are separated by 354 nucleotidesMPMX26_01001 and MPMX26_01002 are separated by 40 nucleotidesMPMX26_01002 and MPMX26_01003 are separated by 81 nucleotides MPMX26_01000: MPMX26_01000 - NADP-dependent malic enzyme, at 1,049,885 to 1,052,155 _01000 MPMX26_01001: MPMX26_01001 - Ribosomal RNA small subunit methyltransferase E, at 1,052,510 to 1,053,229 _01001 MPMX26_01002: MPMX26_01002 - 5,10-methylenetetrahydrofolate reductase, at 1,053,270 to 1,054,106 _01002 MPMX26_01003: MPMX26_01003 - Adenosylhomocysteinase, at 1,054,188 to 1,055,570 _01003 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1at 1051.548 kb on - strand, within MPMX26_01000at 1051.548 kb on - strand, within MPMX26_01000at 1051.553 kb on - strand, within MPMX26_01000at 1051.558 kb on - strand, within MPMX26_01000at 1051.558 kb on - strand, within MPMX26_01000at 1051.592 kb on - strand, within MPMX26_01000at 1051.631 kb on - strand, within MPMX26_01000at 1051.641 kb on - strand, within MPMX26_01000at 1051.641 kb on - strand, within MPMX26_01000at 1051.641 kb on - strand, within MPMX26_01000at 1051.641 kb on - strand, within MPMX26_01000at 1051.653 kb on - strand, within MPMX26_01000at 1051.653 kb on - strand, within MPMX26_01000at 1051.669 kb on - strand, within MPMX26_01000at 1051.742 kb on - strand, within MPMX26_01000at 1051.742 kb on - strand, within MPMX26_01000at 1051.742 kb on - strand, within MPMX26_01000at 1051.742 kb on - strand, within MPMX26_01000at 1051.742 kb on - strand, within MPMX26_01000at 1051.752 kb on - strand, within MPMX26_01000at 1051.752 kb on - strand, within MPMX26_01000at 1051.752 kb on - strand, within MPMX26_01000at 1051.758 kb on - strand, within MPMX26_01000at 1051.777 kb on - strand, within MPMX26_01000at 1051.870 kb on - strand, within MPMX26_01000at 1051.870 kb on - strand, within MPMX26_01000at 1051.870 kb on - strand, within MPMX26_01000at 1051.870 kb on - strand, within MPMX26_01000at 1051.870 kb on - strand, within MPMX26_01000at 1051.870 kb on - strand, within MPMX26_01000at 1051.870 kb on - strand, within MPMX26_01000at 1051.870 kb on - strand, within MPMX26_01000at 1051.870 kb on - strand, within MPMX26_01000at 1051.877 kb on - strand, within MPMX26_01000at 1051.927 kb on - strand, within MPMX26_01000at 1051.946 kb on - strandat 1051.946 kb on - strandat 1051.946 kb on - strandat 1051.969 kb on - strandat 1051.969 kb on - strandat 1051.994 kb on - strandat 1051.994 kb on - strandat 1052.020 kb on - strandat 1052.020 kb on - strandat 1052.028 kb on - strandat 1052.042 kb on - strandat 1052.047 kb on - strandat 1052.118 kb on - strandat 1052.118 kb on - strandat 1052.128 kb on - strandat 1052.128 kb on - strandat 1052.128 kb on - strandat 1052.128 kb on - strandat 1052.128 kb on - strandat 1052.195 kb on - strandat 1052.581 kb on - strandat 1052.632 kb on - strand, within MPMX26_01001at 1052.632 kb on - strand, within MPMX26_01001at 1052.632 kb on - strand, within MPMX26_01001at 1052.698 kb on - strand, within MPMX26_01001at 1052.717 kb on - strand, within MPMX26_01001at 1052.726 kb on - strand, within MPMX26_01001at 1052.776 kb on + strand, within MPMX26_01001at 1052.776 kb on - strand, within MPMX26_01001at 1052.776 kb on - strand, within MPMX26_01001at 1052.776 kb on - strand, within MPMX26_01001at 1052.776 kb on - strand, within MPMX26_01001at 1052.778 kb on - strand, within MPMX26_01001at 1052.786 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.904 kb on - strand, within MPMX26_01001at 1052.909 kb on - strand, within MPMX26_01001at 1052.909 kb on - strand, within MPMX26_01001at 1052.909 kb on - strand, within MPMX26_01001at 1052.912 kb on - strand, within MPMX26_01001at 1052.917 kb on - strand, within MPMX26_01001at 1052.917 kb on - strand, within MPMX26_01001at 1052.920 kb on - strand, within MPMX26_01001at 1052.940 kb on - strand, within MPMX26_01001at 1052.960 kb on - strand, within MPMX26_01001at 1052.978 kb on - strand, within MPMX26_01001at 1052.984 kb on - strand, within MPMX26_01001at 1052.988 kb on - strand, within MPMX26_01001at 1052.990 kb on - strand, within MPMX26_01001at 1052.995 kb on - strand, within MPMX26_01001at 1052.995 kb on - strand, within MPMX26_01001at 1052.995 kb on - strand, within MPMX26_01001at 1052.995 kb on - strand, within MPMX26_01001at 1052.995 kb on - strand, within MPMX26_01001at 1052.995 kb on - strand, within MPMX26_01001at 1052.995 kb on - strand, within MPMX26_01001at 1053.020 kb on - strand, within MPMX26_01001at 1053.110 kb on - strand, within MPMX26_01001at 1053.110 kb on - strand, within MPMX26_01001at 1053.110 kb on - strand, within MPMX26_01001at 1053.110 kb on - strand, within MPMX26_01001at 1053.110 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.120 kb on - strand, within MPMX26_01001at 1053.122 kb on - strand, within MPMX26_01001at 1053.145 kb on - strand, within MPMX26_01001at 1053.192 kb on - strandat 1053.242 kb on - strandat 1053.281 kb on - strandat 1053.281 kb on - strandat 1053.281 kb on - strandat 1053.281 kb on - strandat 1053.281 kb on - strandat 1053.282 kb on - strandat 1053.288 kb on - strandat 1053.315 kb on - strandat 1053.315 kb on - strandat 1053.321 kb on - strandat 1053.365 kb on - strand, within MPMX26_01002at 1053.382 kb on - strand, within MPMX26_01002at 1053.394 kb on - strand, within MPMX26_01002at 1053.415 kb on - strand, within MPMX26_01002at 1053.431 kb on - strand, within MPMX26_01002at 1053.431 kb on - strand, within MPMX26_01002at 1053.477 kb on - strand, within MPMX26_01002at 1053.523 kb on - strand, within MPMX26_01002at 1053.523 kb on - strand, within MPMX26_01002at 1053.523 kb on - strand, within MPMX26_01002at 1053.613 kb on - strand, within MPMX26_01002at 1053.620 kb on - strand, within MPMX26_01002at 1053.625 kb on - strand, within MPMX26_01002at 1053.636 kb on - strand, within MPMX26_01002at 1053.636 kb on - strand, within MPMX26_01002at 1053.636 kb on - strand, within MPMX26_01002at 1053.636 kb on - strand, within MPMX26_01002at 1053.690 kb on - strand, within MPMX26_01002at 1053.728 kb on - strand, within MPMX26_01002at 1053.728 kb on - strand, within MPMX26_01002at 1053.735 kb on - strand, within MPMX26_01002at 1053.789 kb on - strand, within MPMX26_01002at 1053.794 kb on - strand, within MPMX26_01002at 1053.823 kb on - strand, within MPMX26_01002at 1053.823 kb on - strand, within MPMX26_01002at 1053.823 kb on - strand, within MPMX26_01002at 1053.823 kb on - strand, within MPMX26_01002at 1053.849 kb on - strand, within MPMX26_01002at 1053.849 kb on - strand, within MPMX26_01002at 1053.871 kb on - strand, within MPMX26_01002at 1053.871 kb on - strand, within MPMX26_01002at 1053.871 kb on - strand, within MPMX26_01002at 1053.871 kb on - strand, within MPMX26_01002at 1053.872 kb on - strand, within MPMX26_01002at 1053.872 kb on - strand, within MPMX26_01002at 1053.876 kb on - strand, within MPMX26_01002at 1053.892 kb on - strand, within MPMX26_01002at 1053.897 kb on - strand, within MPMX26_01002at 1053.905 kb on - strand, within MPMX26_01002at 1053.907 kb on - strand, within MPMX26_01002at 1053.907 kb on - strand, within MPMX26_01002at 1053.907 kb on - strand, within MPMX26_01002at 1053.913 kb on - strand, within MPMX26_01002at 1053.921 kb on - strand, within MPMX26_01002at 1053.921 kb on - strand, within MPMX26_01002at 1053.921 kb on - strand, within MPMX26_01002at 1053.921 kb on - strand, within MPMX26_01002at 1053.921 kb on - strand, within MPMX26_01002at 1053.926 kb on - strand, within MPMX26_01002at 1053.943 kb on - strand, within MPMX26_01002at 1053.971 kb on - strand, within MPMX26_01002at 1053.987 kb on - strand, within MPMX26_01002at 1053.987 kb on - strand, within MPMX26_01002at 1054.104 kb on - strandat 1054.177 kb on - strandat 1054.182 kb on - strandat 1054.184 kb on - strandat 1054.209 kb on - strandat 1054.210 kb on - strandat 1054.210 kb on - strandat 1054.215 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
1,051,548 - MPMX26_01000 0.73 -0.2
1,051,548 - MPMX26_01000 0.73 +0.1
1,051,553 - MPMX26_01000 0.73 +0.1
1,051,558 - MPMX26_01000 0.74 -0.0
1,051,558 - MPMX26_01000 0.74 -0.2
1,051,592 - MPMX26_01000 0.75 +0.0
1,051,631 - MPMX26_01000 0.77 +0.3
1,051,641 - MPMX26_01000 0.77 -0.3
1,051,641 - MPMX26_01000 0.77 -0.5
1,051,641 - MPMX26_01000 0.77 -0.3
1,051,641 - MPMX26_01000 0.77 -0.1
1,051,653 - MPMX26_01000 0.78 -0.0
1,051,653 - MPMX26_01000 0.78 -0.0
1,051,669 - MPMX26_01000 0.79 +0.3
1,051,742 - MPMX26_01000 0.82 +0.6
1,051,742 - MPMX26_01000 0.82 +0.6
1,051,742 - MPMX26_01000 0.82 -0.1
1,051,742 - MPMX26_01000 0.82 +0.4
1,051,742 - MPMX26_01000 0.82 -0.0
1,051,752 - MPMX26_01000 0.82 +0.3
1,051,752 - MPMX26_01000 0.82 +0.0
1,051,752 - MPMX26_01000 0.82 +0.2
1,051,758 - MPMX26_01000 0.82 +0.1
1,051,777 - MPMX26_01000 0.83 +0.4
1,051,870 - MPMX26_01000 0.87 +0.2
1,051,870 - MPMX26_01000 0.87 -0.3
1,051,870 - MPMX26_01000 0.87 -0.1
1,051,870 - MPMX26_01000 0.87 +0.5
1,051,870 - MPMX26_01000 0.87 -0.2
1,051,870 - MPMX26_01000 0.87 +0.5
1,051,870 - MPMX26_01000 0.87 -0.0
1,051,870 - MPMX26_01000 0.87 +0.3
1,051,870 - MPMX26_01000 0.87 +0.0
1,051,877 - MPMX26_01000 0.88 +0.8
1,051,927 - MPMX26_01000 0.90 -0.3
1,051,946 - -0.2
1,051,946 - -0.2
1,051,946 - +0.5
1,051,969 - +0.1
1,051,969 - +0.7
1,051,994 - +0.0
1,051,994 - +0.1
1,052,020 - +0.3
1,052,020 - +0.2
1,052,028 - +0.5
1,052,042 - +0.4
1,052,047 - +0.2
1,052,118 - +0.0
1,052,118 - +0.3
1,052,128 - +0.1
1,052,128 - +0.2
1,052,128 - -0.3
1,052,128 - +0.3
1,052,128 - +0.1
1,052,195 - -2.7
1,052,581 - +0.4
1,052,632 - MPMX26_01001 0.17 -0.5
1,052,632 - MPMX26_01001 0.17 +0.7
1,052,632 - MPMX26_01001 0.17 -0.4
1,052,698 - MPMX26_01001 0.26 +0.1
1,052,717 - MPMX26_01001 0.29 +0.9
1,052,726 - MPMX26_01001 0.30 -0.1
1,052,776 + MPMX26_01001 0.37 +0.6
1,052,776 - MPMX26_01001 0.37 -0.1
1,052,776 - MPMX26_01001 0.37 +0.2
1,052,776 - MPMX26_01001 0.37 +0.3
1,052,776 - MPMX26_01001 0.37 +0.1
1,052,778 - MPMX26_01001 0.37 +0.2
1,052,786 - MPMX26_01001 0.38 +0.3
1,052,904 - MPMX26_01001 0.55 -0.1
1,052,904 - MPMX26_01001 0.55 +0.2
1,052,904 - MPMX26_01001 0.55 +0.7
1,052,904 - MPMX26_01001 0.55 +0.4
1,052,904 - MPMX26_01001 0.55 +0.3
1,052,904 - MPMX26_01001 0.55 +0.4
1,052,904 - MPMX26_01001 0.55 -0.2
1,052,904 - MPMX26_01001 0.55 +0.4
1,052,904 - MPMX26_01001 0.55 -0.3
1,052,904 - MPMX26_01001 0.55 +0.0
1,052,909 - MPMX26_01001 0.55 +0.0
1,052,909 - MPMX26_01001 0.55 +0.1
1,052,909 - MPMX26_01001 0.55 -0.0
1,052,912 - MPMX26_01001 0.56 -0.1
1,052,917 - MPMX26_01001 0.57 +0.5
1,052,917 - MPMX26_01001 0.57 -0.3
1,052,920 - MPMX26_01001 0.57 +0.2
1,052,940 - MPMX26_01001 0.60 -0.2
1,052,960 - MPMX26_01001 0.62 +0.4
1,052,978 - MPMX26_01001 0.65 +0.3
1,052,984 - MPMX26_01001 0.66 +0.2
1,052,988 - MPMX26_01001 0.66 +0.2
1,052,990 - MPMX26_01001 0.67 +0.4
1,052,995 - MPMX26_01001 0.67 +0.3
1,052,995 - MPMX26_01001 0.67 +0.6
1,052,995 - MPMX26_01001 0.67 +0.2
1,052,995 - MPMX26_01001 0.67 +0.3
1,052,995 - MPMX26_01001 0.67 +0.3
1,052,995 - MPMX26_01001 0.67 -0.3
1,052,995 - MPMX26_01001 0.67 -0.7
1,053,020 - MPMX26_01001 0.71 +0.0
1,053,110 - MPMX26_01001 0.83 -0.1
1,053,110 - MPMX26_01001 0.83 +0.2
1,053,110 - MPMX26_01001 0.83 -0.0
1,053,110 - MPMX26_01001 0.83 -0.7
1,053,110 - MPMX26_01001 0.83 -0.1
1,053,120 - MPMX26_01001 0.85 +0.1
1,053,120 - MPMX26_01001 0.85 +0.1
1,053,120 - MPMX26_01001 0.85 +0.0
1,053,120 - MPMX26_01001 0.85 -0.1
1,053,120 - MPMX26_01001 0.85 -0.4
1,053,120 - MPMX26_01001 0.85 -0.7
1,053,120 - MPMX26_01001 0.85 -0.3
1,053,120 - MPMX26_01001 0.85 -0.1
1,053,120 - MPMX26_01001 0.85 +0.4
1,053,120 - MPMX26_01001 0.85 +0.1
1,053,120 - MPMX26_01001 0.85 +0.3
1,053,120 - MPMX26_01001 0.85 +0.3
1,053,120 - MPMX26_01001 0.85 +0.1
1,053,120 - MPMX26_01001 0.85 +0.1
1,053,120 - MPMX26_01001 0.85 -0.1
1,053,120 - MPMX26_01001 0.85 +0.0
1,053,122 - MPMX26_01001 0.85 +0.7
1,053,145 - MPMX26_01001 0.88 -0.1
1,053,192 - +0.8
1,053,242 - +0.3
1,053,281 - -0.1
1,053,281 - -0.2
1,053,281 - +0.1
1,053,281 - -0.9
1,053,281 - +0.0
1,053,282 - -0.7
1,053,288 - -0.4
1,053,315 - -0.0
1,053,315 - +0.2
1,053,321 - -0.0
1,053,365 - MPMX26_01002 0.11 -0.6
1,053,382 - MPMX26_01002 0.13 -0.4
1,053,394 - MPMX26_01002 0.15 +0.0
1,053,415 - MPMX26_01002 0.17 -0.2
1,053,431 - MPMX26_01002 0.19 +0.1
1,053,431 - MPMX26_01002 0.19 -0.5
1,053,477 - MPMX26_01002 0.25 +0.0
1,053,523 - MPMX26_01002 0.30 +0.1
1,053,523 - MPMX26_01002 0.30 -0.6
1,053,523 - MPMX26_01002 0.30 -0.1
1,053,613 - MPMX26_01002 0.41 -0.7
1,053,620 - MPMX26_01002 0.42 -0.1
1,053,625 - MPMX26_01002 0.42 -0.3
1,053,636 - MPMX26_01002 0.44 -0.5
1,053,636 - MPMX26_01002 0.44 +0.1
1,053,636 - MPMX26_01002 0.44 +0.3
1,053,636 - MPMX26_01002 0.44 -0.0
1,053,690 - MPMX26_01002 0.50 -0.6
1,053,728 - MPMX26_01002 0.55 +0.2
1,053,728 - MPMX26_01002 0.55 -0.2
1,053,735 - MPMX26_01002 0.56 -0.5
1,053,789 - MPMX26_01002 0.62 -0.1
1,053,794 - MPMX26_01002 0.63 -0.2
1,053,823 - MPMX26_01002 0.66 +0.1
1,053,823 - MPMX26_01002 0.66 +0.1
1,053,823 - MPMX26_01002 0.66 -0.5
1,053,823 - MPMX26_01002 0.66 -0.3
1,053,849 - MPMX26_01002 0.69 -0.6
1,053,849 - MPMX26_01002 0.69 -0.2
1,053,871 - MPMX26_01002 0.72 -0.4
1,053,871 - MPMX26_01002 0.72 -0.1
1,053,871 - MPMX26_01002 0.72 +0.2
1,053,871 - MPMX26_01002 0.72 +0.1
1,053,872 - MPMX26_01002 0.72 -0.6
1,053,872 - MPMX26_01002 0.72 +0.0
1,053,876 - MPMX26_01002 0.72 -0.6
1,053,892 - MPMX26_01002 0.74 -0.3
1,053,897 - MPMX26_01002 0.75 -0.3
1,053,905 - MPMX26_01002 0.76 -0.8
1,053,907 - MPMX26_01002 0.76 -0.3
1,053,907 - MPMX26_01002 0.76 -0.1
1,053,907 - MPMX26_01002 0.76 +0.1
1,053,913 - MPMX26_01002 0.77 -0.3
1,053,921 - MPMX26_01002 0.78 -0.4
1,053,921 - MPMX26_01002 0.78 -0.4
1,053,921 - MPMX26_01002 0.78 -0.1
1,053,921 - MPMX26_01002 0.78 -0.8
1,053,921 - MPMX26_01002 0.78 +0.3
1,053,926 - MPMX26_01002 0.78 -0.1
1,053,943 - MPMX26_01002 0.80 -0.4
1,053,971 - MPMX26_01002 0.84 -0.3
1,053,987 - MPMX26_01002 0.86 -0.2
1,053,987 - MPMX26_01002 0.86 +0.6
1,054,104 - +0.4
1,054,177 - -0.0
1,054,182 - -0.3
1,054,184 - +0.2
1,054,209 - -2.3
1,054,210 - -2.0
1,054,210 - -2.1
1,054,215 - -1.5

Or see this region's nucleotide sequence