Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00960 and MPMX26_00961 are separated by 380 nucleotides MPMX26_00961 and MPMX26_00962 are separated by 20 nucleotides MPMX26_00962 and MPMX26_00963 overlap by 8 nucleotides
MPMX26_00960: MPMX26_00960 - Protein ClpV1, at 1,008,427 to 1,011,114
_00960
MPMX26_00961: MPMX26_00961 - hypothetical protein, at 1,011,495 to 1,012,181
_00961
MPMX26_00962: MPMX26_00962 - hypothetical protein, at 1,012,202 to 1,012,705
_00962
MPMX26_00963: MPMX26_00963 - hypothetical protein, at 1,012,698 to 1,014,179
_00963
Position (kb)
1011
1012
1013 Strain fitness (log2 ratio)
-1
0
1
2 at 1010.616 kb on - strand, within MPMX26_00960 at 1010.616 kb on - strand, within MPMX26_00960 at 1010.616 kb on - strand, within MPMX26_00960 at 1010.629 kb on - strand, within MPMX26_00960 at 1010.629 kb on - strand, within MPMX26_00960 at 1010.812 kb on - strand, within MPMX26_00960 at 1010.966 kb on - strand at 1010.966 kb on - strand at 1011.521 kb on + strand at 1011.531 kb on + strand at 1011.560 kb on + strand at 1011.560 kb on + strand at 1011.576 kb on + strand, within MPMX26_00961 at 1011.621 kb on + strand, within MPMX26_00961 at 1011.633 kb on + strand, within MPMX26_00961 at 1011.700 kb on + strand, within MPMX26_00961 at 1011.723 kb on + strand, within MPMX26_00961 at 1011.723 kb on + strand, within MPMX26_00961 at 1011.811 kb on + strand, within MPMX26_00961 at 1011.900 kb on + strand, within MPMX26_00961 at 1011.905 kb on + strand, within MPMX26_00961 at 1011.933 kb on + strand, within MPMX26_00961 at 1011.947 kb on + strand, within MPMX26_00961 at 1012.023 kb on + strand, within MPMX26_00961 at 1012.023 kb on + strand, within MPMX26_00961 at 1012.023 kb on + strand, within MPMX26_00961 at 1012.076 kb on + strand, within MPMX26_00961 at 1012.076 kb on + strand, within MPMX26_00961 at 1012.076 kb on + strand, within MPMX26_00961 at 1012.076 kb on + strand, within MPMX26_00961 at 1012.108 kb on + strand, within MPMX26_00961 at 1012.197 kb on + strand at 1012.264 kb on + strand, within MPMX26_00962 at 1012.392 kb on + strand, within MPMX26_00962 at 1012.402 kb on + strand, within MPMX26_00962 at 1012.402 kb on + strand, within MPMX26_00962 at 1012.402 kb on + strand, within MPMX26_00962 at 1012.402 kb on + strand, within MPMX26_00962 at 1012.418 kb on + strand, within MPMX26_00962 at 1012.418 kb on + strand, within MPMX26_00962 at 1012.418 kb on + strand, within MPMX26_00962 at 1012.418 kb on + strand, within MPMX26_00962 at 1012.418 kb on + strand, within MPMX26_00962 at 1012.428 kb on + strand, within MPMX26_00962 at 1012.456 kb on + strand, within MPMX26_00962 at 1012.462 kb on + strand, within MPMX26_00962 at 1012.504 kb on + strand, within MPMX26_00962 at 1012.536 kb on + strand, within MPMX26_00962 at 1012.541 kb on + strand, within MPMX26_00962 at 1012.549 kb on + strand, within MPMX26_00962 at 1012.549 kb on + strand, within MPMX26_00962 at 1012.579 kb on + strand, within MPMX26_00962 at 1012.612 kb on + strand, within MPMX26_00962 at 1012.612 kb on + strand, within MPMX26_00962 at 1012.642 kb on + strand, within MPMX26_00962 at 1012.659 kb on + strand at 1012.664 kb on + strand at 1012.700 kb on + strand at 1012.700 kb on + strand at 1012.762 kb on + strand at 1012.770 kb on + strand at 1012.800 kb on + strand at 1012.800 kb on + strand at 1012.800 kb on + strand at 1012.800 kb on + strand at 1012.835 kb on + strand at 1012.933 kb on + strand, within MPMX26_00963 at 1013.045 kb on + strand, within MPMX26_00963 at 1013.048 kb on + strand, within MPMX26_00963 at 1013.133 kb on + strand, within MPMX26_00963 at 1013.135 kb on + strand, within MPMX26_00963 at 1013.147 kb on + strand, within MPMX26_00963 at 1013.147 kb on + strand, within MPMX26_00963 at 1013.159 kb on + strand, within MPMX26_00963 at 1013.164 kb on + strand, within MPMX26_00963 at 1013.169 kb on + strand, within MPMX26_00963 at 1013.169 kb on + strand, within MPMX26_00963 at 1013.169 kb on + strand, within MPMX26_00963 at 1013.169 kb on + strand, within MPMX26_00963
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 1,010,616 - MPMX26_00960 0.81 +0.5 1,010,616 - MPMX26_00960 0.81 +0.1 1,010,616 - MPMX26_00960 0.81 -0.4 1,010,629 - MPMX26_00960 0.82 +0.1 1,010,629 - MPMX26_00960 0.82 -0.1 1,010,812 - MPMX26_00960 0.89 -0.1 1,010,966 - +0.0 1,010,966 - +0.3 1,011,521 + +0.0 1,011,531 + +0.1 1,011,560 + +0.1 1,011,560 + -0.2 1,011,576 + MPMX26_00961 0.12 -0.1 1,011,621 + MPMX26_00961 0.18 +0.3 1,011,633 + MPMX26_00961 0.20 -0.0 1,011,700 + MPMX26_00961 0.30 +0.9 1,011,723 + MPMX26_00961 0.33 +0.2 1,011,723 + MPMX26_00961 0.33 +0.4 1,011,811 + MPMX26_00961 0.46 +0.3 1,011,900 + MPMX26_00961 0.59 +0.2 1,011,905 + MPMX26_00961 0.60 -0.1 1,011,933 + MPMX26_00961 0.64 -0.6 1,011,947 + MPMX26_00961 0.66 +0.1 1,012,023 + MPMX26_00961 0.77 -1.2 1,012,023 + MPMX26_00961 0.77 +0.7 1,012,023 + MPMX26_00961 0.77 -0.1 1,012,076 + MPMX26_00961 0.85 -0.0 1,012,076 + MPMX26_00961 0.85 -0.3 1,012,076 + MPMX26_00961 0.85 -0.2 1,012,076 + MPMX26_00961 0.85 +1.1 1,012,108 + MPMX26_00961 0.89 -0.1 1,012,197 + +0.1 1,012,264 + MPMX26_00962 0.12 +0.4 1,012,392 + MPMX26_00962 0.38 +0.0 1,012,402 + MPMX26_00962 0.40 +0.0 1,012,402 + MPMX26_00962 0.40 +0.1 1,012,402 + MPMX26_00962 0.40 +0.0 1,012,402 + MPMX26_00962 0.40 +0.2 1,012,418 + MPMX26_00962 0.43 +0.3 1,012,418 + MPMX26_00962 0.43 +0.3 1,012,418 + MPMX26_00962 0.43 -0.0 1,012,418 + MPMX26_00962 0.43 -0.3 1,012,418 + MPMX26_00962 0.43 +0.3 1,012,428 + MPMX26_00962 0.45 +1.9 1,012,456 + MPMX26_00962 0.50 +0.3 1,012,462 + MPMX26_00962 0.52 -0.1 1,012,504 + MPMX26_00962 0.60 +0.4 1,012,536 + MPMX26_00962 0.66 +0.3 1,012,541 + MPMX26_00962 0.67 +0.2 1,012,549 + MPMX26_00962 0.69 -0.0 1,012,549 + MPMX26_00962 0.69 -1.0 1,012,579 + MPMX26_00962 0.75 +0.2 1,012,612 + MPMX26_00962 0.81 +0.1 1,012,612 + MPMX26_00962 0.81 +0.2 1,012,642 + MPMX26_00962 0.87 +0.4 1,012,659 + -0.1 1,012,664 + +0.3 1,012,700 + +0.2 1,012,700 + +0.3 1,012,762 + +0.4 1,012,770 + -0.1 1,012,800 + -0.1 1,012,800 + +0.1 1,012,800 + +0.2 1,012,800 + +0.5 1,012,835 + -0.2 1,012,933 + MPMX26_00963 0.16 +2.2 1,013,045 + MPMX26_00963 0.23 +0.2 1,013,048 + MPMX26_00963 0.24 -0.0 1,013,133 + MPMX26_00963 0.29 -0.7 1,013,135 + MPMX26_00963 0.29 +0.4 1,013,147 + MPMX26_00963 0.30 -0.1 1,013,147 + MPMX26_00963 0.30 -0.1 1,013,159 + MPMX26_00963 0.31 +0.2 1,013,164 + MPMX26_00963 0.31 +1.1 1,013,169 + MPMX26_00963 0.32 +0.8 1,013,169 + MPMX26_00963 0.32 -0.1 1,013,169 + MPMX26_00963 0.32 -0.1 1,013,169 + MPMX26_00963 0.32 +0.4
Or see this region's nucleotide sequence