Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00961

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00960 and MPMX26_00961 are separated by 380 nucleotidesMPMX26_00961 and MPMX26_00962 are separated by 20 nucleotidesMPMX26_00962 and MPMX26_00963 overlap by 8 nucleotides MPMX26_00960: MPMX26_00960 - Protein ClpV1, at 1,008,427 to 1,011,114 _00960 MPMX26_00961: MPMX26_00961 - hypothetical protein, at 1,011,495 to 1,012,181 _00961 MPMX26_00962: MPMX26_00962 - hypothetical protein, at 1,012,202 to 1,012,705 _00962 MPMX26_00963: MPMX26_00963 - hypothetical protein, at 1,012,698 to 1,014,179 _00963 Position (kb) 1011 1012 1013Strain fitness (log2 ratio) -1 0 1 2at 1010.616 kb on - strand, within MPMX26_00960at 1010.616 kb on - strand, within MPMX26_00960at 1010.616 kb on - strand, within MPMX26_00960at 1010.629 kb on - strand, within MPMX26_00960at 1010.629 kb on - strand, within MPMX26_00960at 1010.812 kb on - strand, within MPMX26_00960at 1010.966 kb on - strandat 1010.966 kb on - strandat 1011.521 kb on + strandat 1011.531 kb on + strandat 1011.560 kb on + strandat 1011.560 kb on + strandat 1011.576 kb on + strand, within MPMX26_00961at 1011.621 kb on + strand, within MPMX26_00961at 1011.633 kb on + strand, within MPMX26_00961at 1011.700 kb on + strand, within MPMX26_00961at 1011.723 kb on + strand, within MPMX26_00961at 1011.723 kb on + strand, within MPMX26_00961at 1011.811 kb on + strand, within MPMX26_00961at 1011.900 kb on + strand, within MPMX26_00961at 1011.905 kb on + strand, within MPMX26_00961at 1011.933 kb on + strand, within MPMX26_00961at 1011.947 kb on + strand, within MPMX26_00961at 1012.023 kb on + strand, within MPMX26_00961at 1012.023 kb on + strand, within MPMX26_00961at 1012.023 kb on + strand, within MPMX26_00961at 1012.076 kb on + strand, within MPMX26_00961at 1012.076 kb on + strand, within MPMX26_00961at 1012.076 kb on + strand, within MPMX26_00961at 1012.076 kb on + strand, within MPMX26_00961at 1012.108 kb on + strand, within MPMX26_00961at 1012.197 kb on + strandat 1012.264 kb on + strand, within MPMX26_00962at 1012.392 kb on + strand, within MPMX26_00962at 1012.402 kb on + strand, within MPMX26_00962at 1012.402 kb on + strand, within MPMX26_00962at 1012.402 kb on + strand, within MPMX26_00962at 1012.402 kb on + strand, within MPMX26_00962at 1012.418 kb on + strand, within MPMX26_00962at 1012.418 kb on + strand, within MPMX26_00962at 1012.418 kb on + strand, within MPMX26_00962at 1012.418 kb on + strand, within MPMX26_00962at 1012.418 kb on + strand, within MPMX26_00962at 1012.428 kb on + strand, within MPMX26_00962at 1012.456 kb on + strand, within MPMX26_00962at 1012.462 kb on + strand, within MPMX26_00962at 1012.504 kb on + strand, within MPMX26_00962at 1012.536 kb on + strand, within MPMX26_00962at 1012.541 kb on + strand, within MPMX26_00962at 1012.549 kb on + strand, within MPMX26_00962at 1012.549 kb on + strand, within MPMX26_00962at 1012.579 kb on + strand, within MPMX26_00962at 1012.612 kb on + strand, within MPMX26_00962at 1012.612 kb on + strand, within MPMX26_00962at 1012.642 kb on + strand, within MPMX26_00962at 1012.659 kb on + strandat 1012.664 kb on + strandat 1012.700 kb on + strandat 1012.700 kb on + strandat 1012.762 kb on + strandat 1012.770 kb on + strandat 1012.800 kb on + strandat 1012.800 kb on + strandat 1012.800 kb on + strandat 1012.800 kb on + strandat 1012.835 kb on + strandat 1012.933 kb on + strand, within MPMX26_00963at 1013.045 kb on + strand, within MPMX26_00963at 1013.048 kb on + strand, within MPMX26_00963at 1013.133 kb on + strand, within MPMX26_00963at 1013.135 kb on + strand, within MPMX26_00963at 1013.147 kb on + strand, within MPMX26_00963at 1013.147 kb on + strand, within MPMX26_00963at 1013.159 kb on + strand, within MPMX26_00963at 1013.164 kb on + strand, within MPMX26_00963at 1013.169 kb on + strand, within MPMX26_00963at 1013.169 kb on + strand, within MPMX26_00963at 1013.169 kb on + strand, within MPMX26_00963at 1013.169 kb on + strand, within MPMX26_00963

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,010,616 - MPMX26_00960 0.81 +0.5
1,010,616 - MPMX26_00960 0.81 +0.1
1,010,616 - MPMX26_00960 0.81 -0.4
1,010,629 - MPMX26_00960 0.82 +0.1
1,010,629 - MPMX26_00960 0.82 -0.1
1,010,812 - MPMX26_00960 0.89 -0.1
1,010,966 - +0.0
1,010,966 - +0.3
1,011,521 + +0.0
1,011,531 + +0.1
1,011,560 + +0.1
1,011,560 + -0.2
1,011,576 + MPMX26_00961 0.12 -0.1
1,011,621 + MPMX26_00961 0.18 +0.3
1,011,633 + MPMX26_00961 0.20 -0.0
1,011,700 + MPMX26_00961 0.30 +0.9
1,011,723 + MPMX26_00961 0.33 +0.2
1,011,723 + MPMX26_00961 0.33 +0.4
1,011,811 + MPMX26_00961 0.46 +0.3
1,011,900 + MPMX26_00961 0.59 +0.2
1,011,905 + MPMX26_00961 0.60 -0.1
1,011,933 + MPMX26_00961 0.64 -0.6
1,011,947 + MPMX26_00961 0.66 +0.1
1,012,023 + MPMX26_00961 0.77 -1.2
1,012,023 + MPMX26_00961 0.77 +0.7
1,012,023 + MPMX26_00961 0.77 -0.1
1,012,076 + MPMX26_00961 0.85 -0.0
1,012,076 + MPMX26_00961 0.85 -0.3
1,012,076 + MPMX26_00961 0.85 -0.2
1,012,076 + MPMX26_00961 0.85 +1.1
1,012,108 + MPMX26_00961 0.89 -0.1
1,012,197 + +0.1
1,012,264 + MPMX26_00962 0.12 +0.4
1,012,392 + MPMX26_00962 0.38 +0.0
1,012,402 + MPMX26_00962 0.40 +0.0
1,012,402 + MPMX26_00962 0.40 +0.1
1,012,402 + MPMX26_00962 0.40 +0.0
1,012,402 + MPMX26_00962 0.40 +0.2
1,012,418 + MPMX26_00962 0.43 +0.3
1,012,418 + MPMX26_00962 0.43 +0.3
1,012,418 + MPMX26_00962 0.43 -0.0
1,012,418 + MPMX26_00962 0.43 -0.3
1,012,418 + MPMX26_00962 0.43 +0.3
1,012,428 + MPMX26_00962 0.45 +1.9
1,012,456 + MPMX26_00962 0.50 +0.3
1,012,462 + MPMX26_00962 0.52 -0.1
1,012,504 + MPMX26_00962 0.60 +0.4
1,012,536 + MPMX26_00962 0.66 +0.3
1,012,541 + MPMX26_00962 0.67 +0.2
1,012,549 + MPMX26_00962 0.69 -0.0
1,012,549 + MPMX26_00962 0.69 -1.0
1,012,579 + MPMX26_00962 0.75 +0.2
1,012,612 + MPMX26_00962 0.81 +0.1
1,012,612 + MPMX26_00962 0.81 +0.2
1,012,642 + MPMX26_00962 0.87 +0.4
1,012,659 + -0.1
1,012,664 + +0.3
1,012,700 + +0.2
1,012,700 + +0.3
1,012,762 + +0.4
1,012,770 + -0.1
1,012,800 + -0.1
1,012,800 + +0.1
1,012,800 + +0.2
1,012,800 + +0.5
1,012,835 + -0.2
1,012,933 + MPMX26_00963 0.16 +2.2
1,013,045 + MPMX26_00963 0.23 +0.2
1,013,048 + MPMX26_00963 0.24 -0.0
1,013,133 + MPMX26_00963 0.29 -0.7
1,013,135 + MPMX26_00963 0.29 +0.4
1,013,147 + MPMX26_00963 0.30 -0.1
1,013,147 + MPMX26_00963 0.30 -0.1
1,013,159 + MPMX26_00963 0.31 +0.2
1,013,164 + MPMX26_00963 0.31 +1.1
1,013,169 + MPMX26_00963 0.32 +0.8
1,013,169 + MPMX26_00963 0.32 -0.1
1,013,169 + MPMX26_00963 0.32 -0.1
1,013,169 + MPMX26_00963 0.32 +0.4

Or see this region's nucleotide sequence