Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF944 and GFF945 are separated by 10 nucleotides GFF945 and GFF946 are separated by 2 nucleotides GFF946 and GFF947 are separated by 43 nucleotides
GFF944 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 677,590 to 679,188
GFF944
GFF945 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 679,199 to 679,699
GFF945
GFF946 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 679,702 to 681,171
GFF946
GFF947 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 681,215 to 682,423
GFF947
Position (kb) 679
680
681
682 Strain fitness (log2 ratio) -2
-1
0
1 at 678.720 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 678.998 kb on - strand, within GFF944 at 679.260 kb on + strand, within GFF945 at 679.261 kb on - strand, within GFF945 at 679.653 kb on - strand at 679.653 kb on - strand at 679.654 kb on - strand at 679.687 kb on - strand at 679.795 kb on + strand at 679.795 kb on + strand at 680.007 kb on + strand, within GFF946 at 680.156 kb on + strand, within GFF946 at 680.207 kb on + strand, within GFF946 at 680.236 kb on + strand, within GFF946 at 680.237 kb on - strand, within GFF946 at 680.343 kb on - strand, within GFF946 at 680.343 kb on - strand, within GFF946 at 680.372 kb on + strand, within GFF946 at 680.373 kb on - strand, within GFF946 at 680.413 kb on - strand, within GFF946 at 680.570 kb on + strand, within GFF946 at 680.571 kb on - strand, within GFF946 at 680.571 kb on - strand, within GFF946 at 680.993 kb on + strand, within GFF946 at 681.187 kb on + strand at 681.450 kb on + strand, within GFF947 at 681.450 kb on + strand, within GFF947 at 681.450 kb on + strand, within GFF947 at 681.450 kb on + strand, within GFF947 at 681.451 kb on - strand, within GFF947 at 681.501 kb on + strand, within GFF947 at 681.501 kb on + strand, within GFF947 at 681.501 kb on + strand, within GFF947 at 681.502 kb on - strand, within GFF947 at 681.567 kb on + strand, within GFF947 at 681.567 kb on + strand, within GFF947 at 681.567 kb on + strand, within GFF947 at 681.568 kb on - strand, within GFF947 at 681.582 kb on + strand, within GFF947 at 681.811 kb on + strand, within GFF947 at 681.879 kb on + strand, within GFF947 at 681.879 kb on + strand, within GFF947 at 681.880 kb on - strand, within GFF947 at 681.957 kb on + strand, within GFF947 at 681.957 kb on + strand, within GFF947 at 681.958 kb on - strand, within GFF947 at 681.958 kb on - strand, within GFF947 at 681.958 kb on - strand, within GFF947 at 681.958 kb on - strand, within GFF947 at 681.977 kb on + strand, within GFF947 at 681.978 kb on - strand, within GFF947 at 682.030 kb on + strand, within GFF947 at 682.030 kb on + strand, within GFF947 at 682.030 kb on + strand, within GFF947 at 682.164 kb on + strand, within GFF947 at 682.164 kb on + strand, within GFF947 at 682.164 kb on + strand, within GFF947 at 682.164 kb on + strand, within GFF947
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 678,720 - GFF944 0.71 -0.6 678,998 - GFF944 0.88 +0.1 678,998 - GFF944 0.88 +0.3 678,998 - GFF944 0.88 +1.0 678,998 - GFF944 0.88 +0.0 679,260 + GFF945 0.12 -0.2 679,261 - GFF945 0.12 +0.3 679,653 - -0.3 679,653 - -0.1 679,654 - +0.1 679,687 - +0.3 679,795 + +1.2 679,795 + +0.1 680,007 + GFF946 0.21 -1.6 680,156 + GFF946 0.31 +0.3 680,207 + GFF946 0.34 -1.0 680,236 + GFF946 0.36 +0.4 680,237 - GFF946 0.36 +0.1 680,343 - GFF946 0.44 +0.1 680,343 - GFF946 0.44 +0.4 680,372 + GFF946 0.46 -0.2 680,373 - GFF946 0.46 +0.2 680,413 - GFF946 0.48 +0.3 680,570 + GFF946 0.59 -0.2 680,571 - GFF946 0.59 -0.7 680,571 - GFF946 0.59 -0.6 680,993 + GFF946 0.88 -1.1 681,187 + -0.5 681,450 + GFF947 0.19 -0.4 681,450 + GFF947 0.19 +1.6 681,450 + GFF947 0.19 -0.7 681,450 + GFF947 0.19 -0.1 681,451 - GFF947 0.20 -0.0 681,501 + GFF947 0.24 +0.3 681,501 + GFF947 0.24 -0.5 681,501 + GFF947 0.24 -0.2 681,502 - GFF947 0.24 -0.0 681,567 + GFF947 0.29 +0.3 681,567 + GFF947 0.29 -0.2 681,567 + GFF947 0.29 -0.1 681,568 - GFF947 0.29 +0.3 681,582 + GFF947 0.30 -0.4 681,811 + GFF947 0.49 +0.5 681,879 + GFF947 0.55 -2.2 681,879 + GFF947 0.55 -0.2 681,880 - GFF947 0.55 -0.3 681,957 + GFF947 0.61 -0.3 681,957 + GFF947 0.61 -0.2 681,958 - GFF947 0.61 -0.0 681,958 - GFF947 0.61 +0.3 681,958 - GFF947 0.61 +0.6 681,958 - GFF947 0.61 +0.7 681,977 + GFF947 0.63 -0.2 681,978 - GFF947 0.63 +0.7 682,030 + GFF947 0.67 +0.3 682,030 + GFF947 0.67 -0.9 682,030 + GFF947 0.67 +0.4 682,164 + GFF947 0.78 +0.8 682,164 + GFF947 0.78 +0.1 682,164 + GFF947 0.78 +1.4 682,164 + GFF947 0.78 -0.0
Or see this region's nucleotide sequence