Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF847 and GFF848 are separated by 20 nucleotides
GFF847 - hypothetical protein, at 551,599 to 552,078
GFF847
GFF848 - hypothetical protein, at 552,099 to 552,950
GFF848
Position (kb) 552
553 Strain fitness (log2 ratio) -2
-1
0
1 at 552.098 kb on + strand at 552.294 kb on + strand, within GFF848 at 552.294 kb on + strand, within GFF848 at 552.294 kb on + strand, within GFF848 at 552.295 kb on - strand, within GFF848 at 552.295 kb on - strand, within GFF848 at 552.369 kb on + strand, within GFF848 at 552.531 kb on + strand, within GFF848 at 552.531 kb on + strand, within GFF848 at 552.532 kb on - strand, within GFF848 at 552.532 kb on - strand, within GFF848 at 552.537 kb on + strand, within GFF848 at 552.537 kb on + strand, within GFF848 at 552.537 kb on + strand, within GFF848 at 552.537 kb on + strand, within GFF848 at 552.538 kb on - strand, within GFF848 at 552.538 kb on - strand, within GFF848 at 552.600 kb on + strand, within GFF848 at 552.600 kb on + strand, within GFF848 at 552.600 kb on + strand, within GFF848 at 552.600 kb on + strand, within GFF848 at 552.601 kb on - strand, within GFF848 at 552.601 kb on - strand, within GFF848 at 552.685 kb on - strand, within GFF848 at 552.685 kb on - strand, within GFF848 at 552.685 kb on - strand, within GFF848 at 552.852 kb on + strand, within GFF848 at 552.852 kb on + strand, within GFF848 at 552.853 kb on - strand, within GFF848 at 552.853 kb on - strand, within GFF848 at 552.853 kb on - strand, within GFF848 at 552.853 kb on - strand, within GFF848 at 552.928 kb on - strand at 552.928 kb on - strand at 553.005 kb on + strand at 553.005 kb on + strand at 553.034 kb on - strand at 553.082 kb on - strand at 553.162 kb on + strand at 553.162 kb on + strand at 553.162 kb on + strand at 553.162 kb on + strand at 553.163 kb on - strand at 553.163 kb on - strand at 553.163 kb on - strand at 553.163 kb on - strand at 553.163 kb on - strand at 553.186 kb on + strand at 553.187 kb on - strand at 553.187 kb on - strand at 553.208 kb on + strand at 553.208 kb on + strand at 553.208 kb on + strand at 553.208 kb on + strand at 553.235 kb on - strand at 553.284 kb on - strand at 553.284 kb on - strand at 553.299 kb on + strand at 553.299 kb on + strand at 553.299 kb on + strand at 553.299 kb on + strand at 553.299 kb on + strand at 553.299 kb on + strand at 553.299 kb on + strand at 553.299 kb on + strand at 553.299 kb on + strand at 553.300 kb on - strand at 553.300 kb on - strand at 553.300 kb on - strand at 553.300 kb on - strand at 553.300 kb on - strand at 553.300 kb on - strand at 553.300 kb on - strand at 553.300 kb on - strand at 553.358 kb on - strand at 553.401 kb on + strand at 553.401 kb on + strand at 553.422 kb on - strand at 553.541 kb on - strand at 553.541 kb on - strand at 553.574 kb on - strand at 553.574 kb on - strand at 553.574 kb on - strand at 553.574 kb on - strand at 553.574 kb on - strand at 553.574 kb on - strand at 553.603 kb on + strand at 553.604 kb on - strand at 553.604 kb on - strand at 553.604 kb on - strand at 553.629 kb on + strand at 553.630 kb on - strand at 553.630 kb on - strand at 553.630 kb on - strand at 553.630 kb on - strand at 553.630 kb on - strand at 553.630 kb on - strand at 553.630 kb on - strand at 553.669 kb on + strand at 553.697 kb on + strand at 553.698 kb on - strand at 553.853 kb on + strand at 553.853 kb on + strand at 553.854 kb on - strand at 553.938 kb on + strand at 553.938 kb on + strand at 553.939 kb on - strand at 553.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 552,098 + +0.3 552,294 + GFF848 0.23 -0.4 552,294 + GFF848 0.23 +0.1 552,294 + GFF848 0.23 +0.1 552,295 - GFF848 0.23 -0.2 552,295 - GFF848 0.23 +0.1 552,369 + GFF848 0.32 +0.4 552,531 + GFF848 0.51 -0.0 552,531 + GFF848 0.51 +0.1 552,532 - GFF848 0.51 +0.2 552,532 - GFF848 0.51 +0.0 552,537 + GFF848 0.51 +0.7 552,537 + GFF848 0.51 -0.3 552,537 + GFF848 0.51 -0.4 552,537 + GFF848 0.51 -0.5 552,538 - GFF848 0.52 +0.8 552,538 - GFF848 0.52 -0.4 552,600 + GFF848 0.59 +0.7 552,600 + GFF848 0.59 +0.7 552,600 + GFF848 0.59 +0.4 552,600 + GFF848 0.59 +0.8 552,601 - GFF848 0.59 -0.0 552,601 - GFF848 0.59 -0.5 552,685 - GFF848 0.69 -0.2 552,685 - GFF848 0.69 +0.3 552,685 - GFF848 0.69 +0.2 552,852 + GFF848 0.88 +0.0 552,852 + GFF848 0.88 +0.2 552,853 - GFF848 0.88 -0.1 552,853 - GFF848 0.88 +0.5 552,853 - GFF848 0.88 +0.3 552,853 - GFF848 0.88 +0.2 552,928 - -0.6 552,928 - +0.8 553,005 + +0.2 553,005 + +1.1 553,034 - -0.0 553,082 - -1.3 553,162 + +0.1 553,162 + +0.6 553,162 + +0.1 553,162 + -1.4 553,163 - -0.0 553,163 - +0.6 553,163 - +0.2 553,163 - -0.1 553,163 - +0.0 553,186 + -0.0 553,187 - -0.6 553,187 - -0.4 553,208 + +0.2 553,208 + -0.5 553,208 + +0.0 553,208 + -0.3 553,235 - -0.3 553,284 - +0.5 553,284 - -0.6 553,299 + -0.4 553,299 + -0.1 553,299 + +0.7 553,299 + +0.3 553,299 + -0.1 553,299 + -0.4 553,299 + -0.9 553,299 + -0.9 553,299 + +0.1 553,300 - +0.9 553,300 - -0.2 553,300 - -0.4 553,300 - -0.1 553,300 - -0.1 553,300 - +0.0 553,300 - +1.5 553,300 - -0.3 553,358 - -0.7 553,401 + -0.2 553,401 + -1.1 553,422 - +0.6 553,541 - -0.4 553,541 - -0.1 553,574 - +1.4 553,574 - +0.6 553,574 - -2.0 553,574 - -0.2 553,574 - -0.2 553,574 - -1.5 553,603 + -0.7 553,604 - -0.1 553,604 - -0.2 553,604 - -0.2 553,629 + -0.6 553,630 - +0.1 553,630 - +0.9 553,630 - -0.8 553,630 - -1.2 553,630 - -0.4 553,630 - +0.4 553,630 - -0.4 553,669 + +0.7 553,697 + +0.3 553,698 - +0.9 553,853 + +0.2 553,853 + -0.1 553,854 - +0.1 553,938 + -0.5 553,938 + -0.7 553,939 - +1.2 553,939 - +0.1
Or see this region's nucleotide sequence