Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF814 and GFF815 are separated by 41 nucleotides GFF815 and GFF816 are separated by 18 nucleotides
GFF814 - Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1), at 508,390 to 509,418
GFF814
GFF815 - FIG015547: peptidase, M16 family, at 509,460 to 510,911
GFF815
GFF816 - FIG015287: Zinc protease, at 510,930 to 512,267
GFF816
Position (kb) 509
510
511 Strain fitness (log2 ratio) -1
0
1 at 509.430 kb on + strand at 509.430 kb on + strand at 509.430 kb on + strand at 509.447 kb on + strand at 509.447 kb on + strand at 509.448 kb on - strand at 509.459 kb on + strand at 509.460 kb on - strand at 509.826 kb on + strand, within GFF815 at 509.827 kb on - strand, within GFF815 at 509.827 kb on - strand, within GFF815 at 510.012 kb on + strand, within GFF815 at 510.012 kb on + strand, within GFF815 at 510.012 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.306 kb on + strand, within GFF815 at 510.307 kb on - strand, within GFF815 at 510.400 kb on - strand, within GFF815 at 510.483 kb on + strand, within GFF815 at 510.484 kb on - strand, within GFF815 at 510.660 kb on + strand, within GFF815 at 510.661 kb on - strand, within GFF815 at 510.661 kb on - strand, within GFF815 at 510.661 kb on - strand, within GFF815 at 510.661 kb on - strand, within GFF815 at 510.705 kb on + strand, within GFF815 at 510.802 kb on - strand at 510.802 kb on - strand at 511.473 kb on + strand, within GFF816 at 511.473 kb on + strand, within GFF816 at 511.488 kb on + strand, within GFF816 at 511.488 kb on + strand, within GFF816 at 511.488 kb on + strand, within GFF816 at 511.489 kb on - strand, within GFF816 at 511.489 kb on - strand, within GFF816 at 511.489 kb on - strand, within GFF816 at 511.495 kb on - strand, within GFF816 at 511.552 kb on - strand, within GFF816 at 511.552 kb on - strand, within GFF816 at 511.806 kb on + strand, within GFF816 at 511.806 kb on + strand, within GFF816 at 511.806 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.887 kb on + strand, within GFF816 at 511.887 kb on + strand, within GFF816 at 511.888 kb on - strand, within GFF816 at 511.888 kb on - strand, within GFF816 at 511.902 kb on + strand, within GFF816 at 511.903 kb on - strand, within GFF816
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 509,430 + +0.2 509,430 + -0.4 509,430 + -0.7 509,447 + -0.1 509,447 + -0.3 509,448 - +0.5 509,459 + -0.0 509,460 - -1.4 509,826 + GFF815 0.25 +0.5 509,827 - GFF815 0.25 -0.2 509,827 - GFF815 0.25 +0.1 510,012 + GFF815 0.38 +1.5 510,012 + GFF815 0.38 +0.5 510,012 + GFF815 0.38 -0.1 510,108 + GFF815 0.45 -0.1 510,108 + GFF815 0.45 +1.0 510,108 + GFF815 0.45 +1.1 510,108 + GFF815 0.45 +0.4 510,109 - GFF815 0.45 +0.2 510,109 - GFF815 0.45 -0.5 510,109 - GFF815 0.45 +0.9 510,109 - GFF815 0.45 +1.2 510,109 - GFF815 0.45 +0.5 510,109 - GFF815 0.45 -0.3 510,306 + GFF815 0.58 +0.2 510,307 - GFF815 0.58 +0.6 510,400 - GFF815 0.65 -0.1 510,483 + GFF815 0.70 +0.8 510,484 - GFF815 0.71 +0.5 510,660 + GFF815 0.83 +0.5 510,661 - GFF815 0.83 -0.2 510,661 - GFF815 0.83 -0.5 510,661 - GFF815 0.83 +0.0 510,661 - GFF815 0.83 +0.7 510,705 + GFF815 0.86 -0.0 510,802 - +0.2 510,802 - +0.1 511,473 + GFF816 0.41 +0.9 511,473 + GFF816 0.41 +0.2 511,488 + GFF816 0.42 +0.4 511,488 + GFF816 0.42 +0.6 511,488 + GFF816 0.42 -0.7 511,489 - GFF816 0.42 -0.1 511,489 - GFF816 0.42 -0.3 511,489 - GFF816 0.42 -0.1 511,495 - GFF816 0.42 -0.2 511,552 - GFF816 0.46 -0.0 511,552 - GFF816 0.46 -0.3 511,806 + GFF816 0.65 -0.8 511,806 + GFF816 0.65 -0.2 511,806 + GFF816 0.65 +1.1 511,818 + GFF816 0.66 -0.1 511,818 + GFF816 0.66 -0.9 511,818 + GFF816 0.66 +1.0 511,818 + GFF816 0.66 +0.0 511,818 + GFF816 0.66 -0.7 511,818 + GFF816 0.66 +0.5 511,818 + GFF816 0.66 -0.2 511,819 - GFF816 0.66 -0.3 511,819 - GFF816 0.66 +0.2 511,819 - GFF816 0.66 -0.0 511,819 - GFF816 0.66 -0.7 511,819 - GFF816 0.66 +0.5 511,819 - GFF816 0.66 -0.3 511,887 + GFF816 0.72 +0.2 511,887 + GFF816 0.72 +1.3 511,888 - GFF816 0.72 -0.0 511,888 - GFF816 0.72 -0.4 511,902 + GFF816 0.73 +0.7 511,903 - GFF816 0.73 -0.2
Or see this region's nucleotide sequence