Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF72 and GFF73 overlap by 1 nucleotides GFF73 and GFF74 overlap by 14 nucleotides GFF74 and GFF75 overlap by 4 nucleotides GFF75 and GFF76 are separated by 194 nucleotides
GFF72 - Predicted secretion system X protein GspG-like, at 72,691 to 73,167
GFF72
GFF73 - Predicted secretion system X protein GspG-like 2, at 73,167 to 73,550
GFF73
GFF74 - Predicted secretion system X pseudopilin PulG-like, at 73,537 to 74,055
GFF74
GFF75 - Transcription regulator like protein EpsA, at 74,052 to 74,840
GFF75
GFF76 - hypothetical protein, at 75,035 to 75,880
GFF76
Position (kb) 74
75 Strain fitness (log2 ratio) -1
0
1 at 73.106 kb on - strand, within GFF72 at 73.536 kb on + strand at 73.981 kb on + strand, within GFF74 at 73.982 kb on - strand, within GFF74 at 74.937 kb on - strand at 75.149 kb on + strand, within GFF76 at 75.284 kb on + strand, within GFF76 at 75.296 kb on + strand, within GFF76 at 75.296 kb on + strand, within GFF76 at 75.297 kb on - strand, within GFF76 at 75.569 kb on + strand, within GFF76 at 75.569 kb on + strand, within GFF76 at 75.572 kb on + strand, within GFF76 at 75.573 kb on - strand, within GFF76 at 75.662 kb on + strand, within GFF76 at 75.810 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 73,106 - GFF72 0.87 -0.3 73,536 + +0.2 73,981 + GFF74 0.86 +0.5 73,982 - GFF74 0.86 +0.4 74,937 - +0.1 75,149 + GFF76 0.13 +0.1 75,284 + GFF76 0.29 -0.1 75,296 + GFF76 0.31 -0.3 75,296 + GFF76 0.31 +0.3 75,297 - GFF76 0.31 -0.3 75,569 + GFF76 0.63 -1.0 75,569 + GFF76 0.63 +0.8 75,572 + GFF76 0.63 +0.6 75,573 - GFF76 0.64 +0.4 75,662 + GFF76 0.74 +0.6 75,810 - +0.6
Or see this region's nucleotide sequence