Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5570

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
2,579,910	+		GFF5569	0.17	-0.4
2,579,910	-		GFF5569	0.17	+0.9
2,579,911	-		GFF5569	0.17	-1.0
2,579,911	-		GFF5569	0.17	+0.1
2,579,911	-		GFF5569	0.17	+1.0
2,580,225	+		GFF5569	0.45	+0.2
2,580,225	+		GFF5569	0.45	+0.3
2,580,225	+		GFF5569	0.45	-1.1
2,580,225	+		GFF5569	0.45	-0.2
2,580,226	-		GFF5569	0.45	+0.5
2,580,226	-		GFF5569	0.45	-0.8
2,580,226	-		GFF5569	0.45	-0.9
2,580,226	-		GFF5569	0.45	-0.3
2,580,282	+		GFF5569	0.50	+0.3
2,580,282	+		GFF5569	0.50	-0.3
2,580,283	-		GFF5569	0.50	-0.2
2,580,432	+		GFF5569	0.63	-0.4
2,580,432	+		GFF5569	0.63	-0.1
2,580,432	+		GFF5569	0.63	+0.1
2,580,432	+		GFF5569	0.63	-0.5
2,580,432	+		GFF5569	0.63	+0.5
2,580,432	+		GFF5569	0.63	-0.1
2,580,433	-		GFF5569	0.63	-0.3
2,580,433	-		GFF5569	0.63	-0.1
2,580,433	-		GFF5569	0.63	-0.0
2,580,433	-		GFF5569	0.63	+0.8
2,580,433	-		GFF5569	0.63	-2.2
2,580,433	-		GFF5569	0.63	-0.9
2,581,102	+		GFF5570	0.37	+0.4
2,581,102	+		GFF5570	0.37	+0.4
2,581,103	-		GFF5570	0.37	+1.0
2,581,223	-		GFF5570	0.59	-0.5
2,581,240	+		GFF5570	0.62	-0.2
2,581,240	+		GFF5570	0.62	-0.0
2,581,241	-		GFF5570	0.62	+0.3
2,581,535	+		GFF5571	0.19	-0.9
2,581,901	-				+0.3
2,581,901	-				-0.9
2,582,032	+				-0.2
2,582,032	+				+0.7
2,582,032	+				-0.5
2,582,032	+				+0.2
2,582,032	+				-0.0
2,582,032	+				+0.7
2,582,032	+				-0.1
2,582,032	+				-2.2
2,582,032	+				+0.2
2,582,033	-				-0.5
2,582,033	-				+0.0
2,582,033	-				+0.6
2,582,033	-				-1.3
2,582,033	-				+1.0
2,582,033	-				-0.8
2,582,033	-				-0.1
2,582,257	+		GFF5572	0.23	-0.8
2,582,258	-		GFF5572	0.23	-0.5
2,582,258	-		GFF5572	0.23	-1.3
2,582,392	+		GFF5572	0.35	+0.5
2,582,393	-		GFF5572	0.35	-0.2
2,582,395	+		GFF5572	0.36	-0.1
2,582,395	+		GFF5572	0.36	+0.2
2,582,395	+		GFF5572	0.36	-1.3
2,582,395	+		GFF5572	0.36	+0.1
2,582,395	+		GFF5572	0.36	+0.1
2,582,396	-		GFF5572	0.36	+0.3
2,582,396	-		GFF5572	0.36	+0.1
2,582,396	-		GFF5572	0.36	+0.2
2,582,396	-		GFF5572	0.36	+0.3
2,582,396	-		GFF5572	0.36	+0.1
2,582,396	-		GFF5572	0.36	+0.1
2,582,398	+		GFF5572	0.36	+0.3
2,582,398	+		GFF5572	0.36	+0.4
2,582,398	+		GFF5572	0.36	-0.1
2,582,398	+		GFF5572	0.36	-0.4
2,582,399	-		GFF5572	0.36	+0.2
2,582,399	-		GFF5572	0.36	+0.5
2,582,399	-		GFF5572	0.36	-0.0
2,582,399	-		GFF5572	0.36	-0.6
2,582,399	-		GFF5572	0.36	-0.4
2,582,399	-		GFF5572	0.36	-0.1
2,582,399	-		GFF5572	0.36	+0.2
2,582,401	+		GFF5572	0.36	-0.7
2,582,402	-		GFF5572	0.36	-0.2