Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4973

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
1,990,259	+		GFF4972	0.28	+0.1
1,990,299	+		GFF4972	0.32	-0.1
1,990,299	+		GFF4972	0.32	-0.2
1,990,493	+		GFF4972	0.49	+0.1
1,990,831	-		GFF4972	0.79	-0.4
1,990,904	+		GFF4972	0.86	-0.7
1,990,905	-		GFF4972	0.86	-0.0
1,990,905	-		GFF4972	0.86	+0.4
1,990,905	-		GFF4972	0.86	+0.2
1,991,949	-		GFF4973	0.57	-0.7
1,991,949	-		GFF4973	0.57	-0.0
1,992,224	+		GFF4973	0.75	-1.0
1,992,282	-		GFF4973	0.79	-0.8
1,992,282	-		GFF4973	0.79	+0.2
1,992,335	+		GFF4973	0.82	-0.7
1,992,409	-		GFF4973	0.87	+0.1
1,992,518	+				+0.2
1,992,518	+				-0.1
1,992,619	+				-0.3
1,992,620	-				-0.3
1,992,855	+		GFF4974	0.34	-0.0
1,992,976	-		GFF4974	0.81	+0.7
1,992,976	-		GFF4974	0.81	-0.1
1,993,121	+		GFF4975	0.14	+0.1
1,993,122	-		GFF4975	0.14	+0.2
1,993,122	-		GFF4975	0.14	-0.1
1,993,286	+		GFF4975	0.40	-0.4
1,993,286	+		GFF4975	0.40	+0.3
1,993,382	+		GFF4975	0.56	+0.2
1,993,529	+		GFF4975	0.79	+0.6