Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4519

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
1,444,115	+				+0.9
1,444,116	-				+0.2
1,444,178	+				+0.3
1,444,179	-				-0.1
1,444,179	-				-0.4
1,445,318	+		GFF4519	0.19	+0.0
1,445,318	+		GFF4519	0.19	+1.2
1,445,318	+		GFF4519	0.19	-0.8
1,445,319	-		GFF4519	0.19	-0.1
1,445,319	-		GFF4519	0.19	-0.3
1,446,071	+		GFF4519	0.68	+0.0
1,446,071	+		GFF4519	0.68	-0.1
1,446,072	-		GFF4519	0.68	-0.3
1,446,072	-		GFF4519	0.68	-0.2
1,446,072	-		GFF4519	0.68	+0.3
1,446,090	-		GFF4519	0.69	+0.4
1,446,090	-		GFF4519	0.69	-0.2
1,446,567	-				-0.2
1,446,567	-				+0.1
1,446,567	-				+0.1
1,446,567	-				-0.3
1,446,724	+				+0.2
1,446,724	+				+0.1
1,446,724	+				-0.5
1,446,725	-				-0.3
1,446,725	-				-0.2
1,446,725	-				+0.6
1,446,725	-				+0.3
1,446,760	+				+0.1
1,446,761	-				+0.2
1,446,761	-				+1.0
1,446,761	-				-1.0
1,447,034	+		GFF4520	0.72	-0.7
1,447,034	+		GFF4520	0.72	-0.3
1,447,034	+		GFF4520	0.72	-0.4
1,447,034	+		GFF4520	0.72	+0.1
1,447,035	-		GFF4520	0.73	-0.6
1,447,130	+				-0.1
1,447,130	+				+0.3
1,447,130	+				+0.9
1,447,131	-				-2.2
1,447,255	+				-0.9
1,447,256	-				-1.5
1,447,256	-				-0.9