Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4476

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
1,404,529	+				+1.2
1,404,530	-				+1.5
1,404,616	-				+0.5
1,405,028	+		GFF4475	0.44	+0.3
1,405,028	+		GFF4475	0.44	-0.6
1,405,028	-		GFF4475	0.44	-0.3
1,405,029	-		GFF4475	0.44	-0.9
1,405,029	-		GFF4475	0.44	-0.3
1,405,029	-		GFF4475	0.44	+0.5
1,405,122	-		GFF4475	0.57	-0.2
1,405,122	-		GFF4475	0.57	+0.6
1,405,122	-		GFF4475	0.57	-0.1
1,405,165	-		GFF4475	0.63	+0.1
1,405,165	-		GFF4475	0.63	-0.4
1,405,308	-		GFF4475	0.82	-0.6
1,405,371	-				-0.1
1,405,520	+				+0.6
1,405,520	+				+0.3
1,405,520	+				+0.1
1,405,521	-				-0.2
1,405,523	+				-0.0
1,405,523	+				-0.6
1,405,637	+		GFF4476	0.15	-0.6
1,405,637	+		GFF4476	0.15	+0.2
1,405,637	+		GFF4476	0.15	+0.3
1,405,637	+		GFF4476	0.15	-1.1
1,405,856	+		GFF4476	0.32	+0.3
1,405,856	+		GFF4476	0.32	-0.2
1,405,856	+		GFF4476	0.32	+0.7
1,405,856	+		GFF4476	0.32	-0.3
1,405,856	+		GFF4476	0.32	+1.3
1,405,857	-		GFF4476	0.33	-1.5
1,405,857	-		GFF4476	0.33	-0.5
1,405,857	-		GFF4476	0.33	-0.5
1,405,857	-		GFF4476	0.33	+0.1
1,406,109	-		GFF4476	0.52	-0.1
1,406,109	-		GFF4476	0.52	-1.2
1,406,109	-		GFF4476	0.52	-0.2
1,406,135	+		GFF4476	0.54	-0.2
1,406,135	+		GFF4476	0.54	-0.4
1,406,135	+		GFF4476	0.54	+0.2
1,406,141	+		GFF4476	0.55	-0.2
1,407,334	+		GFF4478	0.28	-0.7
1,407,619	+				-0.0
1,407,619	+				+1.6
1,407,620	-				-0.4
1,407,620	-				+0.1
1,407,620	-				+0.3
1,407,620	-				-0.0