Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF442

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF441 and GFF442 are separated by 140 nucleotidesGFF442 and GFF443 are separated by 1 nucleotidesGFF443 and GFF444 are separated by 49 nucleotides GFF441 - putative exported protein, at 110,863 to 111,837 GFF441 GFF442 - Galactose-binding protein regulator, at 111,978 to 112,871 GFF442 GFF443 - GLCG PROTEIN, at 112,873 to 113,295 GFF443 GFF444 - putative exported protein, at 113,345 to 114,331 GFF444 Position (kb) 111 112 113Strain fitness (log2 ratio) -1 0 1at 111.895 kb on + strandat 111.896 kb on - strandat 112.327 kb on - strand, within GFF442at 112.406 kb on - strand, within GFF442at 112.407 kb on + strand, within GFF442at 112.408 kb on - strand, within GFF442at 113.225 kb on + strand, within GFF443at 113.769 kb on + strand, within GFF444at 113.770 kb on - strand, within GFF444at 113.770 kb on - strand, within GFF444at 113.856 kb on + strand, within GFF444

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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111,895 + -0.0
111,896 - -0.5
112,327 - GFF442 0.39 +0.4
112,406 - GFF442 0.48 -0.1
112,407 + GFF442 0.48 -0.1
112,408 - GFF442 0.48 +0.3
113,225 + GFF443 0.83 +0.3
113,769 + GFF444 0.43 +0.0
113,770 - GFF444 0.43 -0.5
113,770 - GFF444 0.43 +0.0
113,856 + GFF444 0.52 +0.8

Or see this region's nucleotide sequence