Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4382

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
1,310,437	+				-0.4
1,310,537	+		GFF4381	0.11	+0.0
1,310,538	-		GFF4381	0.11	-0.1
1,310,683	-		GFF4381	0.47	-0.2
1,310,818	+		GFF4381	0.81	+0.0
1,310,818	+		GFF4381	0.81	-0.3
1,310,818	+		GFF4381	0.81	+0.1
1,310,818	+		GFF4381	0.81	+0.2
1,310,819	-		GFF4381	0.81	-0.1
1,310,819	-		GFF4381	0.81	-0.1
1,310,819	-		GFF4381	0.81	+0.2
1,310,819	-		GFF4381	0.81	-0.8
1,310,819	-		GFF4381	0.81	-1.0
1,310,872	+				+0.1
1,310,873	-				-0.4
1,310,908	-				-0.2
1,310,923	-				+0.3
1,310,972	+				-0.3
1,310,972	+				+1.8
1,310,972	+				-1.8
1,310,972	+				+0.4
1,310,972	+				+0.6
1,310,973	-				-0.1
1,310,973	-				+0.0
1,310,973	-				+0.5
1,310,982	+				-0.1
1,311,058	+				-0.3
1,311,058	+				-0.6
1,311,094	+				+0.2
1,311,094	+				+0.5
1,311,094	+				+1.8
1,311,095	-				-0.5
1,311,095	-				-0.0
1,311,095	-				+0.0
1,311,101	+				+0.6
1,311,396	-				-0.3
1,311,442	+				+1.1
1,311,442	+				+0.1
1,311,471	-		GFF4382	0.13	+0.0
1,311,700	-		GFF4382	0.60	-0.1
1,311,700	-		GFF4382	0.60	-0.5
1,311,700	-		GFF4382	0.60	-0.7
1,311,700	-		GFF4382	0.60	-0.1
1,311,732	+		GFF4382	0.67	+0.6
1,311,732	+		GFF4382	0.67	+0.1
1,311,732	+		GFF4382	0.67	+1.8
1,311,732	+		GFF4382	0.67	+0.6
1,311,733	-		GFF4382	0.67	-0.9
1,311,733	-		GFF4382	0.67	+0.6
1,311,857	+				+0.3
1,311,873	+				+0.2
1,311,885	+				-0.4
1,311,885	+				-0.9
1,311,938	+				-0.2
1,311,938	+				-0.8
1,311,938	+				+0.2
1,311,938	+				+0.3
1,311,960	+				-0.6
1,312,040	+				+0.9
1,312,061	+				+0.3
1,312,062	-				-0.0
1,312,096	-				-0.3
1,312,115	+				+1.0
1,312,116	-				+1.1
1,312,116	-				-0.2
1,312,127	-				+0.1
1,312,127	-				-0.4
1,312,127	-				-0.1
1,312,156	+				-1.3
1,312,156	+				-0.7
1,312,185	+				+0.6
1,312,185	+				+0.3
1,312,185	+				+0.2
1,312,185	+				+0.3
1,312,185	+				-0.2
1,312,186	-				+0.0
1,312,240	-				+0.6
1,312,251	-				-0.2
1,312,342	+				+0.2
1,312,343	-				+0.2
1,312,343	-				-0.4
1,312,394	+				+0.2
1,312,395	-				-0.2
1,312,395	-				+0.1
1,312,460	+				-0.3
1,312,460	+				-0.8
1,312,461	-				+0.0
1,312,461	-				-0.5
1,312,530	+				-0.8
1,312,530	+				+0.2
1,312,530	+				+0.4
1,312,530	+				-0.0
1,312,530	+				+0.6
1,312,531	-				+0.1
1,312,533	+				-0.3
1,312,533	+				-1.0
1,312,533	+				+1.0
1,312,572	+				-0.2
1,312,573	-				+0.6
1,312,607	+				+0.5
1,312,801	+				+0.7
1,312,801	+				+0.7
1,312,811	+				-0.2
1,312,811	+				+0.1
1,312,812	-				+0.1
1,312,812	-				+0.2
1,312,834	+				+0.2