Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4358

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
1,287,776	+				+0.8
1,287,808	+				+0.2
1,287,809	-				+0.3
1,287,809	-				-0.2
1,287,874	-				+0.3
1,287,922	+				-0.5
1,287,923	-				-0.9
1,287,973	+				+0.1
1,287,974	-				-0.8
1,288,051	+				+0.2
1,288,051	+				+0.2
1,288,051	+				+0.8
1,288,051	+				-0.8
1,288,051	+				-0.2
1,288,051	+				-0.2
1,288,051	+				-0.1
1,288,052	-				+0.0
1,288,052	-				+0.1
1,288,052	-				-0.5
1,288,052	-				-0.8
1,288,052	-				-0.0
1,288,052	-				+0.4
1,288,078	+				-0.6
1,288,078	+				+0.3
1,288,078	+				-0.8
1,288,078	+				-0.1
1,288,078	+				-0.1
1,288,078	+				+0.4
1,288,078	+				-0.7
1,288,078	+				+0.2
1,288,078	+				-3.0
1,288,078	+				-1.3
1,288,078	+				+0.5
1,288,078	+				+0.2
1,288,078	+				-0.6
1,288,078	+				+0.6
1,288,078	+				-1.5
1,288,078	+				+0.2
1,288,078	+				+0.9
1,288,078	+				+0.2
1,288,078	+				-0.2
1,288,078	+				-0.8
1,288,078	+				+0.4
1,288,078	+				-0.1
1,288,078	+				+0.3
1,288,078	+				-0.4
1,288,079	-				+0.1
1,288,079	-				-0.5
1,288,079	-				-0.0
1,288,079	-				+0.2
1,288,079	-				-0.1
1,288,079	-				-0.1
1,288,079	-				+0.5
1,288,079	-				-0.6
1,288,079	-				+0.2
1,288,079	-				+0.6
1,288,079	-				+0.3
1,288,079	-				-1.2
1,288,079	-				+0.4
1,288,079	-				-0.1
1,288,079	-				-0.1
1,288,079	-				-1.1
1,288,079	-				-0.2
1,288,079	-				+0.4
1,288,079	-				+0.5
1,288,079	-				-0.4
1,288,079	-				+0.4
1,288,079	-				-0.1
1,288,079	-				-1.2
1,288,079	-				-0.2
1,288,123	+				-0.1
1,288,123	+				+0.7
1,288,124	-				+0.6
1,288,124	-				-0.4
1,288,165	+		GFF4358	0.13	-0.3
1,288,165	+		GFF4358	0.13	+0.2
1,288,165	+		GFF4358	0.13	-0.4
1,288,166	-		GFF4358	0.13	-0.1
1,288,166	-		GFF4358	0.13	-0.2
1,288,209	+		GFF4358	0.16	+0.9
1,288,209	+		GFF4358	0.16	-0.4
1,288,209	+		GFF4358	0.16	-0.3
1,288,209	+		GFF4358	0.16	+0.7
1,288,209	+		GFF4358	0.16	+0.1
1,288,209	+		GFF4358	0.16	+0.7
1,288,209	+		GFF4358	0.16	-0.3
1,288,209	+		GFF4358	0.16	-0.0
1,288,209	+		GFF4358	0.16	-0.2
1,288,209	+		GFF4358	0.16	-0.1
1,288,209	+		GFF4358	0.16	+0.0
1,288,209	+		GFF4358	0.16	-0.1
1,288,209	+		GFF4358	0.16	+0.4
1,288,209	+		GFF4358	0.16	+0.7
1,288,209	+		GFF4358	0.16	+0.6
1,288,209	+		GFF4358	0.16	+0.2
1,288,209	+		GFF4358	0.16	-0.3
1,288,209	+		GFF4358	0.16	+1.0
1,288,209	+		GFF4358	0.16	+1.8
1,288,209	+		GFF4358	0.16	+0.1
1,288,209	+		GFF4358	0.16	+0.6
1,288,209	+		GFF4358	0.16	-0.2
1,288,209	+		GFF4358	0.16	+0.2
1,288,210	-		GFF4358	0.16	-0.3
1,288,210	-		GFF4358	0.16	-0.1
1,288,210	-		GFF4358	0.16	+0.2
1,288,210	-		GFF4358	0.16	-0.9
1,288,210	-		GFF4358	0.16	-0.1
1,288,210	-		GFF4358	0.16	-0.4
1,288,210	-		GFF4358	0.16	-0.3
1,288,210	-		GFF4358	0.16	+0.5
1,288,210	-		GFF4358	0.16	+0.3
1,288,210	-		GFF4358	0.16	+0.4
1,288,210	-		GFF4358	0.16	+0.3
1,288,210	-		GFF4358	0.16	+0.1
1,288,210	-		GFF4358	0.16	-0.6
1,288,210	-		GFF4358	0.16	+0.1
1,288,210	-		GFF4358	0.16	-0.2
1,288,210	-		GFF4358	0.16	-0.7
1,288,210	-		GFF4358	0.16	+0.5
1,288,211	+		GFF4358	0.17	+0.4
1,288,211	+		GFF4358	0.17	-0.2
1,288,211	+		GFF4358	0.17	+0.0
1,288,211	+		GFF4358	0.17	+0.4
1,288,211	+		GFF4358	0.17	-0.1
1,288,211	+		GFF4358	0.17	-0.5
1,288,211	+		GFF4358	0.17	+0.1
1,288,212	-		GFF4358	0.17	+0.2
1,288,212	-		GFF4358	0.17	-0.5
1,288,212	-		GFF4358	0.17	+0.1
1,288,239	+		GFF4358	0.19	+0.5
1,288,239	+		GFF4358	0.19	-0.1
1,288,239	+		GFF4358	0.19	+0.3
1,288,239	+		GFF4358	0.19	+0.3
1,288,240	-		GFF4358	0.19	-0.0
1,288,240	-		GFF4358	0.19	-0.6
1,288,240	-		GFF4358	0.19	-0.7
1,288,516	+		GFF4358	0.41	+0.3
1,288,516	+		GFF4358	0.41	+0.4
1,288,516	+		GFF4358	0.41	-0.5
1,288,517	-		GFF4358	0.41	-0.3
1,288,666	+		GFF4358	0.53	+0.3
1,288,667	-		GFF4358	0.53	-0.9
1,288,819	+		GFF4358	0.65	-0.3
1,288,820	-		GFF4358	0.65	+0.2
1,288,820	-		GFF4358	0.65	+0.6
1,288,820	-		GFF4358	0.65	+0.8
1,288,820	-		GFF4358	0.65	+0.1
1,288,820	-		GFF4358	0.65	+1.2
1,288,900	+		GFF4358	0.71	-0.4
1,288,900	+		GFF4358	0.71	+0.7
1,288,901	-		GFF4358	0.71	+0.4
1,288,901	-		GFF4358	0.71	+0.4
1,288,999	-		GFF4358	0.79	+0.6
1,289,019	+		GFF4358	0.81	-0.2
1,289,113	+		GFF4358	0.88	+0.2
1,289,113	+		GFF4358	0.88	-0.6
1,289,372	+		GFF4359	0.60	+0.4
1,289,373	-		GFF4359	0.60	-0.2
1,289,433	+		GFF4359	0.87	+0.5
1,289,433	+		GFF4359	0.87	+0.3
1,289,433	+		GFF4359	0.87	+0.6
1,289,433	+		GFF4359	0.87	+0.1
1,289,434	-		GFF4359	0.88	+0.9
1,289,434	-		GFF4359	0.88	+0.4
1,289,434	-		GFF4359	0.88	+0.4
1,289,434	-		GFF4359	0.88	+0.2
1,289,434	-		GFF4359	0.88	-0.9
1,289,434	-		GFF4359	0.88	+0.1
1,289,434	-		GFF4359	0.88	+0.4
1,289,496	+				-0.1
1,289,702	+				+0.1
1,289,702	+				+0.1
1,289,702	+				+0.1
1,289,702	+				+0.0
1,289,702	+				+0.0
1,289,702	+				-0.8
1,289,702	+				-0.1
1,289,702	+				+0.5
1,289,703	-				-1.2
1,289,703	-				-0.6
1,289,703	-				+0.7
1,289,734	-				-0.5
1,289,734	-				+0.0
1,289,734	-				-0.3
1,289,814	+				+0.4
1,289,814	+				-0.2
1,289,814	+				-0.2
1,289,815	-				+0.2
1,289,844	-				+0.4
1,290,002	-				-0.9
1,290,092	+		GFF4360	0.11	+0.2
1,290,092	+		GFF4360	0.11	-0.0
1,290,093	-		GFF4360	0.11	+0.7
1,290,093	-		GFF4360	0.11	+0.1
1,290,093	-		GFF4360	0.11	+0.5
1,290,098	+		GFF4360	0.11	+0.8
1,290,099	-		GFF4360	0.11	+0.5
1,290,216	+		GFF4360	0.21	+0.2