Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF425 and GFF426 are separated by 6 nucleotides GFF426 and GFF427 overlap by 41 nucleotides GFF427 and GFF428 are separated by 3 nucleotides
GFF425 - LysR-family transcriptional regulator, at 96,468 to 97,379
GFF425
GFF426 - Transcriptional regulator, GntR family, at 97,386 to 98,135
GFF426
GFF427 - hypothetical protein, at 98,095 to 98,208
GFF427
GFF428 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 98,212 to 99,876
GFF428
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.440 kb on + strand at 96.440 kb on + strand at 96.966 kb on + strand, within GFF425 at 96.966 kb on + strand, within GFF425 at 96.967 kb on - strand, within GFF425 at 96.967 kb on - strand, within GFF425 at 97.086 kb on + strand, within GFF425 at 97.086 kb on + strand, within GFF425 at 97.086 kb on + strand, within GFF425 at 97.335 kb on + strand at 97.336 kb on - strand at 97.336 kb on - strand at 97.336 kb on - strand at 97.337 kb on - strand at 97.378 kb on - strand at 97.450 kb on + strand at 97.450 kb on + strand at 97.594 kb on + strand, within GFF426 at 97.594 kb on + strand, within GFF426 at 97.594 kb on + strand, within GFF426 at 97.594 kb on + strand, within GFF426 at 97.594 kb on + strand, within GFF426 at 97.595 kb on - strand, within GFF426 at 97.701 kb on - strand, within GFF426 at 98.146 kb on + strand, within GFF427 at 98.147 kb on - strand, within GFF427 at 98.166 kb on + strand, within GFF427 at 98.221 kb on - strand at 98.266 kb on + strand at 98.266 kb on + strand at 98.560 kb on + strand, within GFF428 at 98.560 kb on + strand, within GFF428 at 98.563 kb on + strand, within GFF428 at 98.563 kb on + strand, within GFF428 at 98.564 kb on - strand, within GFF428 at 98.564 kb on - strand, within GFF428 at 98.725 kb on + strand, within GFF428 at 98.726 kb on - strand, within GFF428 at 98.737 kb on + strand, within GFF428 at 98.806 kb on + strand, within GFF428 at 98.806 kb on + strand, within GFF428 at 98.807 kb on - strand, within GFF428 at 98.920 kb on + strand, within GFF428 at 98.920 kb on + strand, within GFF428 at 98.920 kb on + strand, within GFF428 at 98.920 kb on + strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428 at 98.921 kb on - strand, within GFF428
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 96,440 + -0.4 96,440 + -0.3 96,966 + GFF425 0.55 -0.2 96,966 + GFF425 0.55 +0.3 96,967 - GFF425 0.55 +0.1 96,967 - GFF425 0.55 +0.5 97,086 + GFF425 0.68 +0.4 97,086 + GFF425 0.68 -0.1 97,086 + GFF425 0.68 +0.6 97,335 + +0.8 97,336 - +0.2 97,336 - +0.9 97,336 - -0.3 97,337 - -0.1 97,378 - -0.1 97,450 + +0.9 97,450 + +0.6 97,594 + GFF426 0.28 -0.4 97,594 + GFF426 0.28 -0.6 97,594 + GFF426 0.28 -1.0 97,594 + GFF426 0.28 -0.5 97,594 + GFF426 0.28 +0.1 97,595 - GFF426 0.28 -0.9 97,701 - GFF426 0.42 -2.3 98,146 + GFF427 0.45 +0.5 98,147 - GFF427 0.46 +0.2 98,166 + GFF427 0.62 -0.2 98,221 - +1.1 98,266 + +0.5 98,266 + +0.3 98,560 + GFF428 0.21 +0.4 98,560 + GFF428 0.21 -1.0 98,563 + GFF428 0.21 +0.1 98,563 + GFF428 0.21 +0.4 98,564 - GFF428 0.21 +1.8 98,564 - GFF428 0.21 -0.3 98,725 + GFF428 0.31 -0.3 98,726 - GFF428 0.31 +0.7 98,737 + GFF428 0.32 -0.2 98,806 + GFF428 0.36 -0.0 98,806 + GFF428 0.36 -0.2 98,807 - GFF428 0.36 +0.0 98,920 + GFF428 0.43 -0.2 98,920 + GFF428 0.43 +0.2 98,920 + GFF428 0.43 +0.1 98,920 + GFF428 0.43 -0.4 98,921 - GFF428 0.43 +0.9 98,921 - GFF428 0.43 +0.4 98,921 - GFF428 0.43 +0.2 98,921 - GFF428 0.43 -0.1 98,921 - GFF428 0.43 -0.2 98,921 - GFF428 0.43 +0.5 98,921 - GFF428 0.43 -0.2
Or see this region's nucleotide sequence