Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4152

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
1,062,627	+		GFF4150	0.73	+0.2
1,062,628	-		GFF4150	0.74	-0.5
1,062,681	+		GFF4150	0.78	-0.0
1,062,681	+		GFF4150	0.78	+0.2
1,062,681	+		GFF4150	0.78	-1.4
1,062,681	+		GFF4150	0.78	+0.5
1,062,682	-		GFF4150	0.78	-0.1
1,062,793	+		GFF4150	0.87	+0.6
1,062,793	+		GFF4150	0.87	+0.8
1,062,793	+		GFF4150	0.87	+1.5
1,062,793	+		GFF4150	0.87	-0.5
1,062,793	+		GFF4150	0.87	-0.0
1,062,794	-		GFF4150	0.87	+0.5
1,062,794	-		GFF4150	0.87	-0.3
1,062,794	-		GFF4150	0.87	+0.1
1,062,794	-		GFF4150	0.87	-0.0
1,062,794	-		GFF4150	0.87	+0.6
1,062,840	+				-0.2
1,062,840	+				-0.2
1,062,840	+				-0.6
1,062,840	+				+0.2
1,062,840	+				-0.2
1,062,840	+				-0.4
1,062,840	+				+0.1
1,062,840	+				-0.3
1,062,840	+				+0.1
1,062,841	-				+0.4
1,062,841	-				+1.0
1,062,841	-				+0.5
1,062,841	-				+0.2
1,062,841	-				+0.4
1,062,841	-				-0.2
1,062,993	-				-0.4
1,062,993	-				+0.4
1,062,993	-				+0.2
1,063,079	+				-0.4
1,063,079	+				+0.2
1,063,079	+				-2.5
1,063,080	-				+0.4
1,063,080	-				-0.0
1,063,080	-				+0.0
1,063,080	-				-0.3
1,063,080	-				+0.8
1,063,190	+				+0.5
1,063,190	+				-0.3
1,063,190	+				+0.3
1,063,190	+				-4.5
1,063,190	+				-0.2
1,063,191	-				-0.5
1,063,191	-				+0.4
1,063,191	-				+0.2
1,063,191	-				+0.6
1,063,191	-				-0.3
1,063,191	-				-0.3
1,063,191	-				-0.5
1,063,194	+				+0.6
1,063,194	+				+0.3
1,063,194	+				+0.5
1,063,194	+				+0.1
1,063,194	+				+0.1
1,063,194	+				-0.3
1,063,194	+				+0.9
1,063,194	+				+0.3
1,063,194	+				+0.3
1,063,194	+				-0.1
1,063,194	+				-0.0
1,063,194	+				+0.6
1,063,194	+				-0.1
1,063,195	-				+0.1
1,063,195	-				+0.1
1,063,195	-				+0.2
1,063,195	-				-0.1
1,063,195	-				-0.4
1,063,195	-				-0.2
1,063,195	-				-0.1
1,063,195	-				+0.2
1,063,195	-				-0.1
1,063,195	-				-0.2
1,063,195	-				-0.1
1,063,195	-				-0.4
1,063,201	+				-0.1
1,063,201	+				+1.4
1,063,201	+				+0.6
1,063,202	-				+0.2
1,063,202	-				-0.1
1,063,202	-				+0.6
1,063,202	-				-0.1
1,063,202	-				-0.2
1,063,202	-				-1.9
1,063,386	+		GFF4151	0.34	-0.2
1,063,386	+		GFF4151	0.34	+0.1
1,063,386	+		GFF4151	0.34	+0.2
1,063,386	+		GFF4151	0.34	-0.4
1,063,386	+		GFF4151	0.34	-0.0
1,063,387	-		GFF4151	0.35	+0.2
1,063,387	-		GFF4151	0.35	-0.2
1,063,387	-		GFF4151	0.35	-1.6
1,063,418	+		GFF4151	0.43	-0.2
1,063,418	+		GFF4151	0.43	-0.1
1,063,419	-		GFF4151	0.43	+0.1
1,063,444	+		GFF4151	0.49	+0.4
1,063,467	+		GFF4151	0.55	-0.6
1,063,467	+		GFF4151	0.55	-0.0
1,063,468	-		GFF4151	0.56	+0.8
1,063,468	-		GFF4151	0.56	+1.6
1,063,468	-		GFF4151	0.56	+0.3
1,063,606	+				+0.7
1,063,606	+				+1.4
1,063,606	+				+0.1
1,063,755	+		GFF4152	0.44	+0.7
1,063,755	+		GFF4152	0.44	+0.9
1,063,755	+		GFF4152	0.44	+0.4
1,063,756	-		GFF4152	0.45	+0.2
1,063,952	+				-0.1
1,063,953	-				+0.3
1,063,953	-				-0.4
1,064,042	-				+0.7
1,064,075	-				-0.0
1,064,100	+				+0.4
1,064,100	+				-0.3
1,064,101	-				+0.1
1,064,101	-				-0.2
1,064,101	-				-0.1
1,064,101	-				-0.5
1,064,101	-				-0.7
1,064,101	-				-0.1
1,064,101	-				+0.4
1,064,153	+				-0.1
1,064,153	+				-0.1
1,064,153	+				-0.1
1,064,153	+				-0.6
1,064,154	-				+0.4
1,064,154	-				-0.3
1,064,154	-				+0.7
1,064,203	+				-0.3
1,064,204	-				+0.6
1,064,261	+				+0.3
1,064,262	-				-0.0
1,064,284	+				-0.2
1,064,285	-				+0.1
1,064,285	-				-0.6
1,064,285	-				+0.8
1,064,408	-				+0.4
1,064,488	+				-0.4
1,064,488	+				-0.2
1,064,488	+				-0.1
1,064,489	-				+0.2
1,064,489	-				-0.0
1,064,489	-				-0.5
1,064,501	-				+0.1
1,064,530	+				-0.1
1,064,536	+				+0.3
1,064,620	-				+0.8
1,064,641	+				-0.5
1,064,690	-				+1.6
1,064,716	-				+0.9
1,064,763	+				+0.3
1,064,763	+				-0.3
1,064,763	+				-0.0
1,064,763	+				-0.4
1,064,764	-				+0.1
1,064,764	-				+0.4
1,064,764	-				+0.2
1,064,767	+				-0.1
1,064,768	-				+0.1
1,064,768	-				-0.3
1,064,838	+				-1.9
1,064,838	+				+0.1
1,064,838	+				-0.3
1,064,838	+				+1.0
1,064,839	-				+0.8
1,064,839	-				-1.0
1,064,870	+				-0.2
1,064,870	+				+0.7
1,064,871	-				-0.6
1,064,871	-				-0.4
1,064,871	-				+0.1
1,064,902	+				-0.4