Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3996

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3995 and GFF3996 are separated by 8 nucleotidesGFF3996 and GFF3997 overlap by 4 nucleotidesGFF3997 and GFF3998 overlap by 4 nucleotides GFF3995 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 910,764 to 911,984 GFF3995 GFF3996 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 911,993 to 912,949 GFF3996 GFF3997 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 912,946 to 913,935 GFF3997 GFF3998 - Cobyric acid synthase (EC 6.3.5.10), at 913,932 to 915,383 GFF3998 Position (kb) 911 912 913Strain fitness (log2 ratio) -1 0 1at 911.073 kb on + strand, within GFF3995at 911.074 kb on - strand, within GFF3995at 911.088 kb on + strand, within GFF3995at 911.469 kb on + strand, within GFF3995at 911.469 kb on + strand, within GFF3995at 911.469 kb on + strand, within GFF3995at 911.470 kb on - strand, within GFF3995at 911.470 kb on - strand, within GFF3995at 911.565 kb on + strand, within GFF3995at 911.565 kb on + strand, within GFF3995at 911.566 kb on - strand, within GFF3995at 911.566 kb on - strand, within GFF3995at 911.572 kb on - strand, within GFF3995at 912.104 kb on + strand, within GFF3996at 912.105 kb on - strand, within GFF3996at 912.537 kb on - strand, within GFF3996at 912.812 kb on + strand, within GFF3996at 912.813 kb on - strand, within GFF3996at 912.813 kb on - strand, within GFF3996at 912.813 kb on - strand, within GFF3996at 912.813 kb on - strand, within GFF3996at 912.888 kb on + strandat 912.889 kb on - strandat 912.889 kb on - strandat 913.099 kb on + strand, within GFF3997at 913.100 kb on - strand, within GFF3997at 913.100 kb on - strand, within GFF3997at 913.100 kb on - strand, within GFF3997at 913.249 kb on + strand, within GFF3997at 913.418 kb on - strand, within GFF3997at 913.418 kb on - strand, within GFF3997at 913.532 kb on - strand, within GFF3997at 913.756 kb on + strand, within GFF3997at 913.756 kb on + strand, within GFF3997at 913.756 kb on + strand, within GFF3997

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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911,073 + GFF3995 0.25 +0.2
911,074 - GFF3995 0.25 -0.2
911,088 + GFF3995 0.27 +0.4
911,469 + GFF3995 0.58 -0.5
911,469 + GFF3995 0.58 +0.3
911,469 + GFF3995 0.58 +0.4
911,470 - GFF3995 0.58 +0.2
911,470 - GFF3995 0.58 -0.5
911,565 + GFF3995 0.66 +0.6
911,565 + GFF3995 0.66 -0.1
911,566 - GFF3995 0.66 +1.4
911,566 - GFF3995 0.66 -1.2
911,572 - GFF3995 0.66 -0.4
912,104 + GFF3996 0.12 -0.2
912,105 - GFF3996 0.12 -1.4
912,537 - GFF3996 0.57 -0.5
912,812 + GFF3996 0.86 -0.2
912,813 - GFF3996 0.86 -1.2
912,813 - GFF3996 0.86 +0.0
912,813 - GFF3996 0.86 -0.0
912,813 - GFF3996 0.86 +0.6
912,888 + +0.9
912,889 - -0.1
912,889 - -0.1
913,099 + GFF3997 0.15 -0.2
913,100 - GFF3997 0.16 -0.1
913,100 - GFF3997 0.16 +0.1
913,100 - GFF3997 0.16 +0.1
913,249 + GFF3997 0.31 -0.6
913,418 - GFF3997 0.48 +0.1
913,418 - GFF3997 0.48 +0.4
913,532 - GFF3997 0.59 +0.2
913,756 + GFF3997 0.82 -0.3
913,756 + GFF3997 0.82 +0.5
913,756 + GFF3997 0.82 +0.2

Or see this region's nucleotide sequence