Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3937

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3936 and GFF3937 overlap by 4 nucleotidesGFF3937 and GFF3938 are separated by 32 nucleotides GFF3936 - Threonine synthase (EC 4.2.3.1), at 849,422 to 850,864 GFF3936 GFF3937 - Molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 850,861 to 851,403 GFF3937 GFF3938 - Molybdopterin biosynthesis protein MoeA, at 851,436 to 852,692 GFF3938 Position (kb) 850 851 852Strain fitness (log2 ratio) -1 0 1at 850.885 kb on + strandat 850.885 kb on + strandat 851.371 kb on + strandat 852.039 kb on + strand, within GFF3938at 852.039 kb on + strand, within GFF3938at 852.040 kb on - strand, within GFF3938at 852.040 kb on - strand, within GFF3938at 852.291 kb on + strand, within GFF3938at 852.291 kb on + strand, within GFF3938at 852.292 kb on - strand, within GFF3938

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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850,885 + -0.8
850,885 + -0.5
851,371 + -0.1
852,039 + GFF3938 0.48 -1.0
852,039 + GFF3938 0.48 -0.1
852,040 - GFF3938 0.48 -0.1
852,040 - GFF3938 0.48 +0.2
852,291 + GFF3938 0.68 -1.2
852,291 + GFF3938 0.68 -1.1
852,292 - GFF3938 0.68 -0.8

Or see this region's nucleotide sequence