Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3916 and GFF3917 are separated by 5 nucleotides GFF3917 and GFF3918 are separated by 105 nucleotides GFF3918 and GFF3919 are separated by 119 nucleotides GFF3919 and GFF3920 are separated by 160 nucleotides
GFF3916 - Acetate permease ActP (cation/acetate symporter), at 829,754 to 831,451
GFF3916
GFF3917 - Putative membrane protein, clustering with ActP, at 831,457 to 831,765
GFF3917
GFF3918 - hypothetical protein, at 831,871 to 832,053
GFF3918
GFF3919 - FIG137360: hypothetical protein, at 832,173 to 832,994
GFF3919
GFF3920 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 833,155 to 835,548
GFF3920
Position (kb) 832
833 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 831.210 kb on + strand, within GFF3916 at 831.210 kb on + strand, within GFF3916 at 831.210 kb on + strand, within GFF3916 at 831.211 kb on - strand, within GFF3916 at 831.211 kb on - strand, within GFF3916 at 831.211 kb on - strand, within GFF3916 at 831.315 kb on + strand at 831.315 kb on + strand at 831.315 kb on + strand at 831.315 kb on + strand at 831.315 kb on + strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.316 kb on - strand at 831.524 kb on + strand, within GFF3917 at 831.524 kb on + strand, within GFF3917 at 831.524 kb on + strand, within GFF3917 at 831.654 kb on - strand, within GFF3917 at 831.654 kb on - strand, within GFF3917 at 831.654 kb on - strand, within GFF3917 at 831.656 kb on + strand, within GFF3917 at 831.656 kb on + strand, within GFF3917 at 831.656 kb on + strand, within GFF3917 at 831.657 kb on - strand, within GFF3917 at 831.723 kb on - strand, within GFF3917 at 831.723 kb on - strand, within GFF3917 at 831.803 kb on + strand at 831.817 kb on + strand at 831.817 kb on + strand at 831.817 kb on + strand at 831.818 kb on - strand at 831.872 kb on + strand at 831.872 kb on + strand at 831.873 kb on - strand at 831.873 kb on - strand at 832.062 kb on + strand at 832.062 kb on + strand at 832.062 kb on + strand at 832.062 kb on + strand at 832.063 kb on - strand at 832.063 kb on - strand at 832.177 kb on + strand at 832.177 kb on + strand at 832.327 kb on + strand, within GFF3919 at 832.465 kb on + strand, within GFF3919 at 833.008 kb on + strand at 833.008 kb on + strand at 833.008 kb on + strand at 833.008 kb on + strand at 833.008 kb on + strand at 833.009 kb on - strand at 833.009 kb on - strand at 833.037 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.063 kb on - strand at 833.063 kb on - strand at 833.142 kb on + strand at 833.143 kb on - strand at 833.143 kb on - strand at 833.657 kb on - strand, within GFF3920 at 833.677 kb on + strand, within GFF3920 at 833.827 kb on + strand, within GFF3920 at 833.878 kb on + strand, within GFF3920 at 833.878 kb on + strand, within GFF3920 at 833.879 kb on - strand, within GFF3920
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 831,210 + GFF3916 0.86 -0.1 831,210 + GFF3916 0.86 -1.0 831,210 + GFF3916 0.86 -0.2 831,211 - GFF3916 0.86 +0.1 831,211 - GFF3916 0.86 -0.9 831,211 - GFF3916 0.86 +0.1 831,315 + +0.2 831,315 + -0.6 831,315 + -0.0 831,315 + +0.8 831,315 + +0.2 831,316 - +0.3 831,316 - +0.4 831,316 - +0.0 831,316 - -1.5 831,316 - -1.9 831,316 - +0.1 831,524 + GFF3917 0.22 -0.2 831,524 + GFF3917 0.22 +0.1 831,524 + GFF3917 0.22 -0.1 831,654 - GFF3917 0.64 -0.1 831,654 - GFF3917 0.64 -0.2 831,654 - GFF3917 0.64 +0.7 831,656 + GFF3917 0.64 -0.1 831,656 + GFF3917 0.64 -0.2 831,656 + GFF3917 0.64 +0.2 831,657 - GFF3917 0.65 -0.1 831,723 - GFF3917 0.86 +0.5 831,723 - GFF3917 0.86 -0.2 831,803 + +0.6 831,817 + -1.5 831,817 + -0.4 831,817 + +0.4 831,818 - +1.6 831,872 + -1.4 831,872 + +0.5 831,873 - +0.7 831,873 - +0.6 832,062 + +0.6 832,062 + -1.6 832,062 + +0.1 832,062 + +0.5 832,063 - +0.0 832,063 - +0.2 832,177 + +0.3 832,177 + -0.8 832,327 + GFF3919 0.19 -0.2 832,465 + GFF3919 0.36 -0.6 833,008 + -0.1 833,008 + +0.6 833,008 + +0.9 833,008 + +0.9 833,008 + +1.8 833,009 - +0.3 833,009 - +0.8 833,037 + -1.2 833,062 + -0.5 833,062 + -0.8 833,062 + -2.0 833,062 + -1.6 833,062 + -1.8 833,062 + -1.1 833,062 + +0.2 833,063 - -3.0 833,063 - -2.2 833,142 + -2.3 833,143 - -3.2 833,143 - -1.8 833,657 - GFF3920 0.21 -4.0 833,677 + GFF3920 0.22 -3.4 833,827 + GFF3920 0.28 -3.7 833,878 + GFF3920 0.30 -2.2 833,878 + GFF3920 0.30 -1.4 833,879 - GFF3920 0.30 -2.9
Or see this region's nucleotide sequence