Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3806 and GFF3807 overlap by 4 nucleotides GFF3807 and GFF3808 are separated by 220 nucleotides GFF3808 and GFF3809 are separated by 10 nucleotides
GFF3806 - S-adenosylmethionine:2-demethylmenaquinone methyltransferase (EC 2.1.-.-), at 704,653 to 705,618
GFF3806
GFF3807 - hypothetical protein, at 705,615 to 706,193
GFF3807
GFF3808 - Glycosyltransferase, at 706,414 to 711,405
GFF3808
GFF3809 - Glycosyltransferase (EC 2.4.1.-), at 711,416 to 713,254
GFF3809
Position (kb) 706
707
708
709
710
711
712 Strain fitness (log2 ratio) -1
0
1 at 705.436 kb on + strand, within GFF3806 at 705.436 kb on + strand, within GFF3806 at 705.437 kb on - strand, within GFF3806 at 705.437 kb on - strand, within GFF3806 at 705.437 kb on - strand, within GFF3806 at 706.192 kb on - strand at 706.469 kb on + strand at 706.470 kb on - strand at 706.727 kb on + strand at 706.728 kb on - strand at 706.728 kb on - strand at 707.183 kb on + strand, within GFF3808 at 707.279 kb on + strand, within GFF3808 at 707.279 kb on + strand, within GFF3808 at 707.279 kb on + strand, within GFF3808 at 707.280 kb on - strand, within GFF3808 at 707.280 kb on - strand, within GFF3808 at 707.577 kb on - strand, within GFF3808 at 707.759 kb on + strand, within GFF3808 at 707.760 kb on - strand, within GFF3808 at 707.762 kb on + strand, within GFF3808 at 707.762 kb on + strand, within GFF3808 at 707.763 kb on - strand, within GFF3808 at 707.763 kb on - strand, within GFF3808 at 707.763 kb on - strand, within GFF3808 at 707.843 kb on + strand, within GFF3808 at 707.843 kb on + strand, within GFF3808 at 707.843 kb on + strand, within GFF3808 at 707.843 kb on + strand, within GFF3808 at 707.843 kb on + strand, within GFF3808 at 707.843 kb on + strand, within GFF3808 at 707.844 kb on - strand, within GFF3808 at 707.844 kb on - strand, within GFF3808 at 707.844 kb on - strand, within GFF3808 at 707.888 kb on - strand, within GFF3808 at 708.284 kb on + strand, within GFF3808 at 708.285 kb on - strand, within GFF3808 at 708.285 kb on - strand, within GFF3808 at 709.467 kb on - strand, within GFF3808 at 709.617 kb on - strand, within GFF3808 at 711.117 kb on - strand at 711.117 kb on - strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.544 kb on - strand at 711.544 kb on - strand at 711.544 kb on - strand at 711.636 kb on + strand, within GFF3809 at 711.636 kb on + strand, within GFF3809 at 711.822 kb on + strand, within GFF3809 at 711.822 kb on + strand, within GFF3809 at 711.822 kb on + strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.110 kb on + strand, within GFF3809 at 712.110 kb on + strand, within GFF3809 at 712.110 kb on + strand, within GFF3809 at 712.344 kb on + strand, within GFF3809 at 712.345 kb on - strand, within GFF3809
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 705,436 + GFF3806 0.81 -0.2 705,436 + GFF3806 0.81 -0.0 705,437 - GFF3806 0.81 -0.2 705,437 - GFF3806 0.81 -0.1 705,437 - GFF3806 0.81 -0.2 706,192 - -1.2 706,469 + +0.9 706,470 - -0.4 706,727 + -0.0 706,728 - +0.4 706,728 - -0.3 707,183 + GFF3808 0.15 +0.7 707,279 + GFF3808 0.17 +0.3 707,279 + GFF3808 0.17 -0.2 707,279 + GFF3808 0.17 +0.6 707,280 - GFF3808 0.17 -0.2 707,280 - GFF3808 0.17 +0.1 707,577 - GFF3808 0.23 +0.0 707,759 + GFF3808 0.27 +0.3 707,760 - GFF3808 0.27 -0.3 707,762 + GFF3808 0.27 -0.4 707,762 + GFF3808 0.27 -1.2 707,763 - GFF3808 0.27 -1.1 707,763 - GFF3808 0.27 -0.3 707,763 - GFF3808 0.27 +0.6 707,843 + GFF3808 0.29 -0.7 707,843 + GFF3808 0.29 -0.6 707,843 + GFF3808 0.29 +0.6 707,843 + GFF3808 0.29 -0.1 707,843 + GFF3808 0.29 +0.1 707,843 + GFF3808 0.29 -0.3 707,844 - GFF3808 0.29 -0.6 707,844 - GFF3808 0.29 -0.1 707,844 - GFF3808 0.29 -0.1 707,888 - GFF3808 0.30 +0.4 708,284 + GFF3808 0.37 -0.2 708,285 - GFF3808 0.37 -0.2 708,285 - GFF3808 0.37 +0.5 709,467 - GFF3808 0.61 +0.4 709,617 - GFF3808 0.64 -0.0 711,117 - +0.9 711,117 - -0.1 711,543 + -0.4 711,543 + +0.1 711,543 + -0.1 711,543 + +0.7 711,543 + -0.6 711,543 + -0.4 711,543 + -0.1 711,544 - -0.4 711,544 - -0.7 711,544 - -0.1 711,636 + GFF3809 0.12 +0.3 711,636 + GFF3809 0.12 -0.2 711,822 + GFF3809 0.22 -0.0 711,822 + GFF3809 0.22 +1.6 711,822 + GFF3809 0.22 -0.4 711,823 - GFF3809 0.22 +0.3 711,823 - GFF3809 0.22 +0.5 711,823 - GFF3809 0.22 +0.0 711,823 - GFF3809 0.22 +0.0 711,823 - GFF3809 0.22 -0.1 711,823 - GFF3809 0.22 -0.4 712,101 + GFF3809 0.37 -0.8 712,101 + GFF3809 0.37 -0.2 712,101 + GFF3809 0.37 +0.6 712,101 + GFF3809 0.37 -0.3 712,101 + GFF3809 0.37 -0.6 712,102 - GFF3809 0.37 +0.2 712,102 - GFF3809 0.37 -0.2 712,102 - GFF3809 0.37 +0.4 712,102 - GFF3809 0.37 -0.1 712,102 - GFF3809 0.37 -0.7 712,110 + GFF3809 0.38 -0.1 712,110 + GFF3809 0.38 -0.0 712,110 + GFF3809 0.38 -0.8 712,344 + GFF3809 0.50 +1.6 712,345 - GFF3809 0.51 -0.3
Or see this region's nucleotide sequence