Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3574 and GFF3575 are separated by 95 nucleotides GFF3575 and GFF3576 are separated by 154 nucleotides GFF3576 and GFF3577 are separated by 4 nucleotides GFF3577 and GFF3578 are separated by 6 nucleotides
GFF3574 - hypothetical protein, at 461,418 to 462,638
GFF3574
GFF3575 - hypothetical protein, at 462,734 to 463,114
GFF3575
GFF3576 - FIG074102: hypothetical protein, at 463,269 to 464,048
GFF3576
GFF3577 - Pyrrolidone-carboxylate peptidase (EC 3.4.19.3), at 464,053 to 464,700
GFF3577
GFF3578 - FIG00715472: hypothetical protein, at 464,707 to 465,054
GFF3578
Position (kb) 463
464
465 Strain fitness (log2 ratio) -1
0
1 at 462.339 kb on + strand, within GFF3574 at 462.339 kb on + strand, within GFF3574 at 462.339 kb on + strand, within GFF3574 at 462.340 kb on - strand, within GFF3574 at 462.383 kb on - strand, within GFF3574 at 462.383 kb on - strand, within GFF3574 at 462.383 kb on - strand, within GFF3574 at 462.386 kb on - strand, within GFF3574 at 462.648 kb on - strand at 462.680 kb on - strand at 462.957 kb on + strand, within GFF3575 at 462.958 kb on - strand, within GFF3575 at 463.227 kb on - strand at 463.258 kb on - strand at 463.258 kb on - strand at 463.487 kb on - strand, within GFF3576 at 463.542 kb on - strand, within GFF3576 at 463.620 kb on + strand, within GFF3576 at 463.621 kb on - strand, within GFF3576 at 463.779 kb on + strand, within GFF3576 at 463.779 kb on + strand, within GFF3576 at 463.833 kb on + strand, within GFF3576 at 463.834 kb on - strand, within GFF3576 at 463.834 kb on - strand, within GFF3576 at 463.834 kb on - strand, within GFF3576 at 463.834 kb on - strand, within GFF3576 at 463.966 kb on - strand, within GFF3576 at 463.966 kb on - strand, within GFF3576 at 464.042 kb on - strand at 464.396 kb on - strand, within GFF3577 at 464.503 kb on + strand, within GFF3577 at 464.503 kb on + strand, within GFF3577 at 464.503 kb on + strand, within GFF3577 at 464.504 kb on - strand, within GFF3577 at 464.504 kb on - strand, within GFF3577 at 464.504 kb on - strand, within GFF3577 at 464.504 kb on - strand, within GFF3577 at 464.807 kb on + strand, within GFF3578 at 464.834 kb on + strand, within GFF3578 at 464.835 kb on - strand, within GFF3578 at 464.835 kb on - strand, within GFF3578 at 464.846 kb on + strand, within GFF3578 at 464.846 kb on + strand, within GFF3578 at 464.847 kb on - strand, within GFF3578 at 464.847 kb on - strand, within GFF3578 at 464.918 kb on + strand, within GFF3578 at 464.918 kb on + strand, within GFF3578 at 464.919 kb on - strand, within GFF3578 at 464.919 kb on - strand, within GFF3578 at 464.919 kb on - strand, within GFF3578 at 464.919 kb on - strand, within GFF3578 at 464.942 kb on + strand, within GFF3578 at 464.942 kb on + strand, within GFF3578 at 465.005 kb on + strand, within GFF3578 at 465.005 kb on + strand, within GFF3578 at 465.005 kb on + strand, within GFF3578 at 465.006 kb on - strand, within GFF3578 at 465.006 kb on - strand, within GFF3578 at 465.006 kb on - strand, within GFF3578 at 465.006 kb on - strand, within GFF3578
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 462,339 + GFF3574 0.75 -0.1 462,339 + GFF3574 0.75 -0.0 462,339 + GFF3574 0.75 -0.2 462,340 - GFF3574 0.76 +0.2 462,383 - GFF3574 0.79 +0.4 462,383 - GFF3574 0.79 +0.3 462,383 - GFF3574 0.79 +0.4 462,386 - GFF3574 0.79 +0.1 462,648 - +0.2 462,680 - -0.3 462,957 + GFF3575 0.59 -0.6 462,958 - GFF3575 0.59 -0.5 463,227 - -0.4 463,258 - -0.1 463,258 - -0.6 463,487 - GFF3576 0.28 -0.5 463,542 - GFF3576 0.35 +0.6 463,620 + GFF3576 0.45 -0.3 463,621 - GFF3576 0.45 -0.2 463,779 + GFF3576 0.65 +0.9 463,779 + GFF3576 0.65 -0.4 463,833 + GFF3576 0.72 -0.2 463,834 - GFF3576 0.72 -0.5 463,834 - GFF3576 0.72 -0.4 463,834 - GFF3576 0.72 +0.6 463,834 - GFF3576 0.72 +0.2 463,966 - GFF3576 0.89 +0.6 463,966 - GFF3576 0.89 +0.5 464,042 - +0.2 464,396 - GFF3577 0.53 -0.4 464,503 + GFF3577 0.69 -0.3 464,503 + GFF3577 0.69 +0.4 464,503 + GFF3577 0.69 +0.6 464,504 - GFF3577 0.70 -0.4 464,504 - GFF3577 0.70 +0.1 464,504 - GFF3577 0.70 +0.0 464,504 - GFF3577 0.70 -0.1 464,807 + GFF3578 0.29 -0.9 464,834 + GFF3578 0.36 -0.2 464,835 - GFF3578 0.37 -0.4 464,835 - GFF3578 0.37 -0.6 464,846 + GFF3578 0.40 -0.3 464,846 + GFF3578 0.40 -0.2 464,847 - GFF3578 0.40 -1.4 464,847 - GFF3578 0.40 -0.0 464,918 + GFF3578 0.61 +0.0 464,918 + GFF3578 0.61 +0.0 464,919 - GFF3578 0.61 -0.6 464,919 - GFF3578 0.61 +0.1 464,919 - GFF3578 0.61 +0.1 464,919 - GFF3578 0.61 +0.1 464,942 + GFF3578 0.68 -0.6 464,942 + GFF3578 0.68 -0.3 465,005 + GFF3578 0.86 +0.2 465,005 + GFF3578 0.86 -0.2 465,005 + GFF3578 0.86 +0.2 465,006 - GFF3578 0.86 -1.2 465,006 - GFF3578 0.86 -0.4 465,006 - GFF3578 0.86 -0.3 465,006 - GFF3578 0.86 -0.9
Or see this region's nucleotide sequence