Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3526 and GFF3527 are separated by 383 nucleotides GFF3527 and GFF3528 are separated by 37 nucleotides
GFF3526 - Lipid A export ATP-binding/permease protein MsbA, at 409,151 to 411,217
GFF3526
GFF3527 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 411,601 to 413,826
GFF3527
GFF3528 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 413,864 to 416,452
GFF3528
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -1
0
1
2 at 410.607 kb on + strand, within GFF3526 at 410.832 kb on + strand, within GFF3526 at 410.832 kb on + strand, within GFF3526 at 410.833 kb on - strand, within GFF3526 at 410.833 kb on - strand, within GFF3526 at 410.902 kb on - strand, within GFF3526 at 411.151 kb on + strand at 411.151 kb on + strand at 411.152 kb on - strand at 411.152 kb on - strand at 411.152 kb on - strand at 411.152 kb on - strand at 411.152 kb on - strand at 411.163 kb on + strand at 411.231 kb on - strand at 411.296 kb on + strand at 411.297 kb on - strand at 411.337 kb on + strand at 411.563 kb on + strand at 411.563 kb on + strand at 411.564 kb on - strand at 411.564 kb on - strand at 411.580 kb on - strand at 411.640 kb on + strand at 411.640 kb on + strand at 411.640 kb on + strand at 411.640 kb on + strand at 411.640 kb on + strand at 411.641 kb on - strand at 411.641 kb on - strand at 411.641 kb on - strand at 411.641 kb on - strand at 411.667 kb on + strand at 411.667 kb on + strand at 411.667 kb on + strand at 411.668 kb on - strand at 411.940 kb on + strand, within GFF3527 at 411.941 kb on - strand, within GFF3527 at 412.099 kb on + strand, within GFF3527 at 412.099 kb on + strand, within GFF3527 at 412.100 kb on - strand, within GFF3527 at 412.100 kb on - strand, within GFF3527 at 412.510 kb on + strand, within GFF3527 at 412.510 kb on + strand, within GFF3527 at 412.510 kb on + strand, within GFF3527 at 412.510 kb on + strand, within GFF3527 at 412.511 kb on - strand, within GFF3527 at 412.511 kb on - strand, within GFF3527 at 413.311 kb on + strand, within GFF3527 at 413.311 kb on + strand, within GFF3527 at 413.312 kb on - strand, within GFF3527 at 413.515 kb on + strand, within GFF3527 at 413.516 kb on - strand, within GFF3527 at 413.858 kb on + strand at 413.858 kb on + strand at 413.858 kb on + strand at 413.858 kb on + strand at 413.859 kb on - strand at 413.859 kb on - strand at 413.859 kb on - strand at 413.859 kb on - strand at 414.174 kb on - strand, within GFF3528 at 414.716 kb on + strand, within GFF3528 at 414.717 kb on - strand, within GFF3528 at 414.717 kb on - strand, within GFF3528 at 414.717 kb on - strand, within GFF3528 at 414.717 kb on - strand, within GFF3528
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 410,607 + GFF3526 0.70 -0.0 410,832 + GFF3526 0.81 +0.9 410,832 + GFF3526 0.81 -0.4 410,833 - GFF3526 0.81 +0.2 410,833 - GFF3526 0.81 -1.4 410,902 - GFF3526 0.85 -1.2 411,151 + -0.2 411,151 + -0.0 411,152 - -0.1 411,152 - -0.8 411,152 - +0.5 411,152 - -0.6 411,152 - -1.7 411,163 + +0.2 411,231 - -0.1 411,296 + -0.4 411,297 - +0.5 411,337 + +0.6 411,563 + +1.1 411,563 + +0.6 411,564 - +0.7 411,564 - +0.2 411,580 - +0.4 411,640 + +1.3 411,640 + -0.7 411,640 + +0.5 411,640 + +0.1 411,640 + -0.6 411,641 - +0.3 411,641 - -0.2 411,641 - -0.2 411,641 - +0.4 411,667 + -0.1 411,667 + -0.2 411,667 + +0.6 411,668 - -1.1 411,940 + GFF3527 0.15 -0.7 411,941 - GFF3527 0.15 -0.4 412,099 + GFF3527 0.22 +0.3 412,099 + GFF3527 0.22 -0.1 412,100 - GFF3527 0.22 +0.0 412,100 - GFF3527 0.22 -0.6 412,510 + GFF3527 0.41 +0.5 412,510 + GFF3527 0.41 +0.0 412,510 + GFF3527 0.41 -0.6 412,510 + GFF3527 0.41 -1.1 412,511 - GFF3527 0.41 -0.3 412,511 - GFF3527 0.41 +0.1 413,311 + GFF3527 0.77 +1.1 413,311 + GFF3527 0.77 +2.0 413,312 - GFF3527 0.77 +0.4 413,515 + GFF3527 0.86 -0.3 413,516 - GFF3527 0.86 -0.9 413,858 + +0.3 413,858 + -0.2 413,858 + +0.3 413,858 + +0.4 413,859 - +1.1 413,859 - -0.2 413,859 - -1.5 413,859 - -0.5 414,174 - GFF3528 0.12 -0.2 414,716 + GFF3528 0.33 -0.7 414,717 - GFF3528 0.33 -0.1 414,717 - GFF3528 0.33 +0.4 414,717 - GFF3528 0.33 +0.5 414,717 - GFF3528 0.33 -0.2
Or see this region's nucleotide sequence