Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3385 and GFF3386 overlap by 4 nucleotides GFF3386 and GFF3387 are separated by 10 nucleotides GFF3387 and GFF3388 are separated by 89 nucleotides
GFF3385 - hypothetical protein PA3071, at 269,619 to 270,689
GFF3385
GFF3386 - BatA (Bacteroides aerotolerance operon), at 270,686 to 271,753
GFF3386
GFF3387 - Glutathione-dependent formaldehyde-activating, GFA, at 271,764 to 272,165
GFF3387
GFF3388 - Putative n-hydroxybenzoate hydroxylase, at 272,255 to 273,451
GFF3388
Position (kb) 270
271
272 Strain fitness (log2 ratio) -1
0
1 at 269.767 kb on - strand, within GFF3385 at 269.767 kb on - strand, within GFF3385 at 270.765 kb on - strand at 270.765 kb on - strand at 270.765 kb on - strand at 270.765 kb on - strand at 271.266 kb on - strand, within GFF3386 at 271.266 kb on - strand, within GFF3386 at 271.361 kb on + strand, within GFF3386 at 271.361 kb on + strand, within GFF3386 at 271.362 kb on - strand, within GFF3386 at 271.362 kb on - strand, within GFF3386 at 271.362 kb on - strand, within GFF3386 at 271.463 kb on + strand, within GFF3386 at 271.464 kb on - strand, within GFF3386 at 271.580 kb on + strand, within GFF3386 at 271.581 kb on - strand, within GFF3386 at 271.581 kb on - strand, within GFF3386 at 271.583 kb on + strand, within GFF3386 at 271.584 kb on - strand, within GFF3386 at 271.584 kb on - strand, within GFF3386 at 271.584 kb on - strand, within GFF3386 at 271.587 kb on - strand, within GFF3386 at 271.619 kb on + strand, within GFF3386 at 271.619 kb on + strand, within GFF3386 at 271.751 kb on + strand at 271.752 kb on - strand at 271.752 kb on - strand at 271.822 kb on + strand, within GFF3387 at 271.822 kb on + strand, within GFF3387 at 271.823 kb on - strand, within GFF3387 at 271.823 kb on - strand, within GFF3387 at 271.823 kb on - strand, within GFF3387 at 272.086 kb on + strand, within GFF3387 at 272.087 kb on - strand, within GFF3387 at 272.152 kb on + strand at 272.186 kb on + strand at 272.187 kb on - strand at 272.187 kb on - strand at 272.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 269,767 - GFF3385 0.14 -0.2 269,767 - GFF3385 0.14 +0.3 270,765 - +0.1 270,765 - -1.7 270,765 - -0.4 270,765 - +0.2 271,266 - GFF3386 0.54 -0.9 271,266 - GFF3386 0.54 +0.2 271,361 + GFF3386 0.63 -0.4 271,361 + GFF3386 0.63 -0.5 271,362 - GFF3386 0.63 +0.8 271,362 - GFF3386 0.63 +0.2 271,362 - GFF3386 0.63 -0.7 271,463 + GFF3386 0.73 -0.1 271,464 - GFF3386 0.73 -0.0 271,580 + GFF3386 0.84 -0.4 271,581 - GFF3386 0.84 +0.3 271,581 - GFF3386 0.84 -1.6 271,583 + GFF3386 0.84 +1.4 271,584 - GFF3386 0.84 -0.0 271,584 - GFF3386 0.84 -0.0 271,584 - GFF3386 0.84 -0.5 271,587 - GFF3386 0.84 +0.3 271,619 + GFF3386 0.87 -1.1 271,619 + GFF3386 0.87 +1.0 271,751 + -0.3 271,752 - +0.2 271,752 - +0.1 271,822 + GFF3387 0.14 +0.1 271,822 + GFF3387 0.14 +0.1 271,823 - GFF3387 0.15 +0.4 271,823 - GFF3387 0.15 -0.3 271,823 - GFF3387 0.15 +1.0 272,086 + GFF3387 0.80 -0.2 272,087 - GFF3387 0.80 +0.4 272,152 + -0.0 272,186 + -0.1 272,187 - +0.2 272,187 - +0.7 272,189 - -0.4
Or see this region's nucleotide sequence