Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3254 and GFF3255 overlap by 4 nucleotides GFF3255 and GFF3256 overlap by 4 nucleotides GFF3256 and GFF3257 are separated by 15 nucleotides
GFF3254 - Ribonuclease PH (EC 2.7.7.56), at 136,477 to 137,199
GFF3254
GFF3255 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 137,196 to 137,819
GFF3255
GFF3256 - Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB, at 137,816 to 139,093
GFF3256
GFF3257 - Heavy metal sensor histidine kinase, at 139,109 to 140,506
GFF3257
Position (kb) 137
138
139
140 Strain fitness (log2 ratio) -1
0
1
2 at 136.880 kb on - strand, within GFF3254 at 137.008 kb on + strand, within GFF3254 at 137.008 kb on + strand, within GFF3254 at 137.009 kb on - strand, within GFF3254 at 137.009 kb on - strand, within GFF3254 at 137.009 kb on - strand, within GFF3254 at 137.009 kb on - strand, within GFF3254 at 137.451 kb on + strand, within GFF3255 at 137.451 kb on + strand, within GFF3255 at 137.455 kb on - strand, within GFF3255 at 137.455 kb on - strand, within GFF3255 at 137.676 kb on + strand, within GFF3255 at 137.676 kb on + strand, within GFF3255 at 137.677 kb on - strand, within GFF3255 at 137.677 kb on - strand, within GFF3255 at 137.677 kb on - strand, within GFF3255 at 137.960 kb on + strand, within GFF3256 at 137.960 kb on + strand, within GFF3256 at 137.961 kb on - strand, within GFF3256 at 138.443 kb on + strand, within GFF3256 at 138.443 kb on + strand, within GFF3256 at 138.443 kb on + strand, within GFF3256 at 138.443 kb on + strand, within GFF3256 at 138.444 kb on - strand, within GFF3256 at 138.444 kb on - strand, within GFF3256 at 138.527 kb on + strand, within GFF3256 at 138.528 kb on - strand, within GFF3256 at 138.554 kb on + strand, within GFF3256 at 138.554 kb on + strand, within GFF3256 at 138.554 kb on + strand, within GFF3256 at 138.554 kb on + strand, within GFF3256 at 138.555 kb on - strand, within GFF3256 at 138.567 kb on - strand, within GFF3256 at 138.668 kb on + strand, within GFF3256 at 138.707 kb on + strand, within GFF3256 at 138.707 kb on + strand, within GFF3256 at 138.708 kb on - strand, within GFF3256 at 138.708 kb on - strand, within GFF3256 at 138.812 kb on + strand, within GFF3256 at 138.812 kb on + strand, within GFF3256 at 138.812 kb on + strand, within GFF3256 at 138.812 kb on + strand, within GFF3256 at 138.812 kb on + strand, within GFF3256 at 138.813 kb on - strand, within GFF3256 at 138.813 kb on - strand, within GFF3256 at 138.813 kb on - strand, within GFF3256 at 138.813 kb on - strand, within GFF3256 at 138.813 kb on - strand, within GFF3256 at 139.794 kb on + strand, within GFF3257 at 139.794 kb on + strand, within GFF3257 at 139.794 kb on + strand, within GFF3257 at 139.794 kb on + strand, within GFF3257 at 139.795 kb on - strand, within GFF3257 at 139.795 kb on - strand, within GFF3257 at 139.795 kb on - strand, within GFF3257 at 139.795 kb on - strand, within GFF3257 at 139.795 kb on - strand, within GFF3257
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 136,880 - GFF3254 0.56 -0.2 137,008 + GFF3254 0.73 -0.2 137,008 + GFF3254 0.73 +1.1 137,009 - GFF3254 0.74 +0.1 137,009 - GFF3254 0.74 -0.0 137,009 - GFF3254 0.74 +0.7 137,009 - GFF3254 0.74 -0.4 137,451 + GFF3255 0.41 -0.8 137,451 + GFF3255 0.41 -0.2 137,455 - GFF3255 0.42 +0.9 137,455 - GFF3255 0.42 +0.3 137,676 + GFF3255 0.77 +1.3 137,676 + GFF3255 0.77 -0.2 137,677 - GFF3255 0.77 +0.3 137,677 - GFF3255 0.77 -0.4 137,677 - GFF3255 0.77 +0.4 137,960 + GFF3256 0.11 -0.3 137,960 + GFF3256 0.11 -0.1 137,961 - GFF3256 0.11 +0.9 138,443 + GFF3256 0.49 -0.2 138,443 + GFF3256 0.49 -0.3 138,443 + GFF3256 0.49 +0.2 138,443 + GFF3256 0.49 +0.8 138,444 - GFF3256 0.49 -0.3 138,444 - GFF3256 0.49 -0.0 138,527 + GFF3256 0.56 -1.6 138,528 - GFF3256 0.56 +0.2 138,554 + GFF3256 0.58 -1.0 138,554 + GFF3256 0.58 +0.0 138,554 + GFF3256 0.58 -0.3 138,554 + GFF3256 0.58 -0.9 138,555 - GFF3256 0.58 -0.1 138,567 - GFF3256 0.59 -0.8 138,668 + GFF3256 0.67 +0.9 138,707 + GFF3256 0.70 -0.6 138,707 + GFF3256 0.70 +2.1 138,708 - GFF3256 0.70 -1.3 138,708 - GFF3256 0.70 -0.2 138,812 + GFF3256 0.78 -0.6 138,812 + GFF3256 0.78 -0.4 138,812 + GFF3256 0.78 +1.4 138,812 + GFF3256 0.78 -0.8 138,812 + GFF3256 0.78 +1.7 138,813 - GFF3256 0.78 -1.2 138,813 - GFF3256 0.78 +0.3 138,813 - GFF3256 0.78 -0.3 138,813 - GFF3256 0.78 +0.3 138,813 - GFF3256 0.78 -1.2 139,794 + GFF3257 0.49 +0.7 139,794 + GFF3257 0.49 -1.2 139,794 + GFF3257 0.49 -0.6 139,794 + GFF3257 0.49 -0.6 139,795 - GFF3257 0.49 -0.1 139,795 - GFF3257 0.49 -0.4 139,795 - GFF3257 0.49 -0.8 139,795 - GFF3257 0.49 +0.1 139,795 - GFF3257 0.49 -0.2
Or see this region's nucleotide sequence