Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3233

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
115,324	+				-0.2
115,324	+				-0.4
115,377	+				-0.2
115,377	+				-0.2
115,437	+		GFF3232	0.22	+1.1
115,438	-		GFF3232	0.22	+0.3
116,249	+		GFF3233	0.43	-0.8
116,250	-		GFF3233	0.43	-1.1
116,297	+		GFF3233	0.47	-0.6
116,297	+		GFF3233	0.47	+0.0
116,627	+		GFF3233	0.78	+1.1
116,628	-		GFF3233	0.78	-0.9
116,684	+		GFF3233	0.83	+0.6
116,684	+		GFF3233	0.83	-0.5
116,837	+				-0.1
116,874	+				+1.4
116,874	+				-0.2
116,875	-				-0.1
116,952	-				-0.4
117,122	+		GFF3234	0.33	+0.5
117,122	+		GFF3234	0.33	+0.1
117,122	+		GFF3234	0.33	+0.2
117,123	-		GFF3234	0.33	+0.4
117,123	-		GFF3234	0.33	-0.4
117,123	-		GFF3234	0.33	+0.0
117,452	+		GFF3234	0.77	-1.2
117,452	+		GFF3234	0.77	+0.1
117,453	-		GFF3234	0.77	-0.2
117,506	+		GFF3234	0.85	+0.4
117,506	+		GFF3234	0.85	+0.4
117,506	+		GFF3234	0.85	+0.1