Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3219 and GFF3220 are separated by 4 nucleotides GFF3220 and GFF3221 are separated by 98 nucleotides GFF3221 and GFF3222 are separated by 312 nucleotides
GFF3219 - hypothetical protein, at 100,366 to 101,523
GFF3219
GFF3220 - hypothetical protein, at 101,528 to 101,842
GFF3220
GFF3221 - hypothetical protein, at 101,941 to 103,146
GFF3221
GFF3222 - Probable transmembrane protein, at 103,459 to 104,223
GFF3222
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -2
-1
0
1 at 101.078 kb on - strand, within GFF3219 at 101.348 kb on - strand, within GFF3219 at 101.480 kb on - strand at 101.873 kb on - strand at 102.035 kb on + strand at 102.063 kb on - strand, within GFF3221 at 102.063 kb on - strand, within GFF3221 at 102.146 kb on + strand, within GFF3221 at 102.147 kb on - strand, within GFF3221 at 102.521 kb on + strand, within GFF3221 at 102.522 kb on - strand, within GFF3221 at 102.522 kb on - strand, within GFF3221 at 102.581 kb on + strand, within GFF3221 at 102.582 kb on - strand, within GFF3221 at 102.587 kb on + strand, within GFF3221 at 102.630 kb on - strand, within GFF3221 at 103.196 kb on + strand at 103.259 kb on - strand at 103.259 kb on - strand at 103.299 kb on - strand at 103.313 kb on - strand at 103.357 kb on - strand at 103.418 kb on + strand at 103.480 kb on - strand at 103.480 kb on - strand at 103.582 kb on + strand, within GFF3222 at 103.582 kb on + strand, within GFF3222 at 103.582 kb on + strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.750 kb on + strand, within GFF3222 at 103.750 kb on + strand, within GFF3222 at 103.750 kb on + strand, within GFF3222 at 103.751 kb on - strand, within GFF3222 at 103.751 kb on - strand, within GFF3222 at 103.751 kb on - strand, within GFF3222 at 103.932 kb on + strand, within GFF3222 at 103.933 kb on - strand, within GFF3222 at 103.933 kb on - strand, within GFF3222 at 103.981 kb on + strand, within GFF3222 at 103.982 kb on - strand, within GFF3222
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 101,078 - GFF3219 0.61 -1.2 101,348 - GFF3219 0.85 +0.1 101,480 - -1.4 101,873 - +0.9 102,035 + -0.4 102,063 - GFF3221 0.10 -0.6 102,063 - GFF3221 0.10 -0.1 102,146 + GFF3221 0.17 +0.5 102,147 - GFF3221 0.17 -0.9 102,521 + GFF3221 0.48 +0.2 102,522 - GFF3221 0.48 +0.2 102,522 - GFF3221 0.48 +1.3 102,581 + GFF3221 0.53 -0.2 102,582 - GFF3221 0.53 -0.1 102,587 + GFF3221 0.54 -0.4 102,630 - GFF3221 0.57 +0.6 103,196 + -0.2 103,259 - +0.1 103,259 - +0.3 103,299 - -0.5 103,313 - -0.4 103,357 - +0.2 103,418 + +0.5 103,480 - -1.9 103,480 - -0.3 103,582 + GFF3222 0.16 +0.4 103,582 + GFF3222 0.16 -0.7 103,582 + GFF3222 0.16 -1.3 103,583 - GFF3222 0.16 +0.4 103,583 - GFF3222 0.16 +0.1 103,583 - GFF3222 0.16 -0.7 103,583 - GFF3222 0.16 +0.1 103,583 - GFF3222 0.16 -0.1 103,583 - GFF3222 0.16 +0.1 103,583 - GFF3222 0.16 +0.2 103,750 + GFF3222 0.38 -0.3 103,750 + GFF3222 0.38 -0.2 103,750 + GFF3222 0.38 -1.3 103,751 - GFF3222 0.38 -0.0 103,751 - GFF3222 0.38 +0.2 103,751 - GFF3222 0.38 +0.2 103,932 + GFF3222 0.62 -0.8 103,933 - GFF3222 0.62 +0.3 103,933 - GFF3222 0.62 -1.9 103,981 + GFF3222 0.68 -0.2 103,982 - GFF3222 0.68 +0.1
Or see this region's nucleotide sequence