Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3158 and GFF3159 are separated by 126 nucleotides GFF3159 and GFF3160 overlap by 4 nucleotides GFF3160 and GFF3161 are separated by 1 nucleotides
GFF3158 - hypothetical protein, at 35,710 to 35,949
GFF3158
GFF3159 - hypothetical protein, at 36,076 to 36,699
GFF3159
GFF3160 - IncF plasmid conjugative transfer protein TraD, at 36,696 to 38,612
GFF3160
GFF3161 - Conjugative transfer protein TraI, relaxase, at 38,614 to 40,422
GFF3161
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -1
0
1 at 35.725 kb on - strand at 35.866 kb on + strand, within GFF3158 at 35.866 kb on + strand, within GFF3158 at 35.867 kb on - strand, within GFF3158 at 35.867 kb on - strand, within GFF3158 at 35.867 kb on - strand, within GFF3158 at 36.027 kb on - strand at 36.360 kb on - strand, within GFF3159 at 36.398 kb on + strand, within GFF3159 at 36.398 kb on + strand, within GFF3159 at 36.399 kb on - strand, within GFF3159 at 36.644 kb on + strand at 36.645 kb on - strand at 36.805 kb on + strand at 36.806 kb on - strand at 36.880 kb on + strand at 36.880 kb on + strand at 36.880 kb on + strand at 36.881 kb on - strand at 36.941 kb on + strand, within GFF3160 at 37.216 kb on + strand, within GFF3160 at 37.309 kb on + strand, within GFF3160 at 37.310 kb on - strand, within GFF3160 at 37.459 kb on + strand, within GFF3160 at 37.460 kb on - strand, within GFF3160 at 37.540 kb on + strand, within GFF3160 at 37.541 kb on - strand, within GFF3160 at 37.673 kb on - strand, within GFF3160 at 37.673 kb on - strand, within GFF3160 at 38.172 kb on - strand, within GFF3160 at 38.172 kb on - strand, within GFF3160 at 38.173 kb on + strand, within GFF3160 at 38.174 kb on - strand, within GFF3160
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 35,725 - +0.6 35,866 + GFF3158 0.65 -1.2 35,866 + GFF3158 0.65 -0.4 35,867 - GFF3158 0.65 -0.9 35,867 - GFF3158 0.65 -0.6 35,867 - GFF3158 0.65 +0.1 36,027 - +0.6 36,360 - GFF3159 0.46 -0.1 36,398 + GFF3159 0.52 +0.1 36,398 + GFF3159 0.52 +0.6 36,399 - GFF3159 0.52 +0.0 36,644 + -0.5 36,645 - -0.6 36,805 + +0.2 36,806 - +0.8 36,880 + -0.6 36,880 + +0.2 36,880 + +0.0 36,881 - +0.8 36,941 + GFF3160 0.13 -1.1 37,216 + GFF3160 0.27 -0.5 37,309 + GFF3160 0.32 +0.0 37,310 - GFF3160 0.32 -0.0 37,459 + GFF3160 0.40 -0.2 37,460 - GFF3160 0.40 -1.1 37,540 + GFF3160 0.44 -0.2 37,541 - GFF3160 0.44 -0.6 37,673 - GFF3160 0.51 -0.0 37,673 - GFF3160 0.51 +0.1 38,172 - GFF3160 0.77 -0.8 38,172 - GFF3160 0.77 -0.3 38,173 + GFF3160 0.77 -0.5 38,174 - GFF3160 0.77 -1.7
Or see this region's nucleotide sequence