Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3143

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
20,064	+		GFF3141	0.80	-1.2
20,065	-		GFF3141	0.80	+0.4
20,065	-		GFF3141	0.80	+1.6
20,426	+		GFF3142	0.16	-0.6
20,427	-		GFF3142	0.17	-0.2
20,429	+		GFF3142	0.17	+0.3
20,430	-		GFF3142	0.17	+2.6
20,801	+		GFF3142	0.78	-0.2
20,801	+		GFF3142	0.78	-0.8
21,468	+				-0.1
21,468	+				+0.0
21,469	-				+0.3
21,688	-		GFF3144	0.15	-0.3
21,955	-		GFF3144	0.26	-0.1
21,973	-		GFF3144	0.26	-0.1
22,131	+		GFF3144	0.32	-0.5
22,270	-		GFF3144	0.38	+0.5