Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3127 and GFF3128 are separated by 24 nucleotides GFF3128 and GFF3129 are separated by 75 nucleotides GFF3129 and GFF3130 overlap by 4 nucleotides
GFF3127 - plasmid pRiA4b ORF-3 family protein, at 4,947 to 5,537
GFF3127
GFF3128 - Mobile element protein, at 5,562 to 7,085
GFF3128
GFF3129 - Mobile element protein, at 7,161 to 7,493
GFF3129
GFF3130 - Mobile element protein, at 7,490 to 7,828
GFF3130
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -1
0
1 at 4.712 kb on - strand at 4.749 kb on + strand at 4.749 kb on + strand at 4.878 kb on + strand at 4.878 kb on + strand at 4.878 kb on + strand at 4.948 kb on + strand at 5.190 kb on + strand, within GFF3127 at 5.190 kb on + strand, within GFF3127 at 5.191 kb on - strand, within GFF3127 at 5.227 kb on + strand, within GFF3127 at 5.227 kb on + strand, within GFF3127 at 5.227 kb on + strand, within GFF3127 at 5.228 kb on - strand, within GFF3127 at 5.228 kb on - strand, within GFF3127 at 5.228 kb on - strand, within GFF3127 at 5.228 kb on - strand, within GFF3127 at 5.360 kb on + strand, within GFF3127 at 5.361 kb on - strand, within GFF3127 at 5.361 kb on - strand, within GFF3127 at 5.422 kb on + strand, within GFF3127 at 5.424 kb on - strand, within GFF3127 at 5.464 kb on + strand, within GFF3127 at 5.477 kb on + strand, within GFF3127 at 5.477 kb on + strand, within GFF3127 at 5.488 kb on + strand at 5.548 kb on + strand at 5.651 kb on - strand at 5.768 kb on + strand, within GFF3128 at 5.769 kb on - strand, within GFF3128 at 5.860 kb on + strand, within GFF3128 at 6.278 kb on - strand, within GFF3128 at 6.664 kb on + strand, within GFF3128 at 6.664 kb on + strand, within GFF3128 at 6.665 kb on - strand, within GFF3128 at 6.793 kb on - strand, within GFF3128 at 7.375 kb on + strand, within GFF3129 at 7.376 kb on - strand, within GFF3129 at 7.376 kb on - strand, within GFF3129 at 7.376 kb on - strand, within GFF3129 at 7.839 kb on + strand at 7.840 kb on - strand at 7.840 kb on - strand at 7.840 kb on - strand at 7.840 kb on - strand at 7.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 4,712 - -0.7 4,749 + -0.0 4,749 + +0.2 4,878 + +0.0 4,878 + +0.4 4,878 + +0.4 4,948 + -0.0 5,190 + GFF3127 0.41 -0.6 5,190 + GFF3127 0.41 -0.5 5,191 - GFF3127 0.41 -0.6 5,227 + GFF3127 0.47 +0.6 5,227 + GFF3127 0.47 +0.1 5,227 + GFF3127 0.47 -0.4 5,228 - GFF3127 0.48 -0.4 5,228 - GFF3127 0.48 +0.5 5,228 - GFF3127 0.48 -0.4 5,228 - GFF3127 0.48 -0.5 5,360 + GFF3127 0.70 -0.1 5,361 - GFF3127 0.70 -0.1 5,361 - GFF3127 0.70 +0.0 5,422 + GFF3127 0.80 -0.1 5,424 - GFF3127 0.81 +1.1 5,464 + GFF3127 0.87 +0.1 5,477 + GFF3127 0.90 -0.1 5,477 + GFF3127 0.90 +0.8 5,488 + +0.1 5,548 + +0.8 5,651 - +0.1 5,768 + GFF3128 0.14 +0.1 5,769 - GFF3128 0.14 -0.2 5,860 + GFF3128 0.20 -0.1 6,278 - GFF3128 0.47 +1.2 6,664 + GFF3128 0.72 -1.4 6,664 + GFF3128 0.72 +0.1 6,665 - GFF3128 0.72 -0.1 6,793 - GFF3128 0.81 +0.1 7,375 + GFF3129 0.64 -0.6 7,376 - GFF3129 0.65 +0.4 7,376 - GFF3129 0.65 -0.4 7,376 - GFF3129 0.65 -0.2 7,839 + -0.9 7,840 - +0.1 7,840 - +0.3 7,840 - +1.0 7,840 - +0.1 7,871 + -0.8
Or see this region's nucleotide sequence