Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF280 and GFF281 are separated by 190 nucleotides GFF281 and GFF282 are separated by 4 nucleotides
GFF280 - Transcriptional regulators, LysR family, at 295,615 to 296,550
GFF280
GFF281 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 296,741 to 297,928
GFF281
GFF282 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 297,933 to 298,949
GFF282
Position (kb) 296
297
298 Strain fitness (log2 ratio) -1
0
1 at 296.210 kb on + strand, within GFF280 at 296.211 kb on - strand, within GFF280 at 296.211 kb on - strand, within GFF280 at 296.211 kb on - strand, within GFF280 at 296.213 kb on + strand, within GFF280 at 296.213 kb on + strand, within GFF280 at 296.214 kb on - strand, within GFF280 at 296.501 kb on + strand at 296.501 kb on + strand at 296.501 kb on + strand at 296.502 kb on - strand at 296.586 kb on - strand at 296.591 kb on + strand at 296.607 kb on - strand at 296.617 kb on + strand at 296.622 kb on + strand at 296.634 kb on - strand at 296.634 kb on - strand at 296.664 kb on + strand at 296.664 kb on + strand at 296.664 kb on + strand at 296.664 kb on + strand at 296.664 kb on + strand at 296.665 kb on - strand at 296.665 kb on - strand at 296.727 kb on + strand at 296.727 kb on + strand at 296.728 kb on - strand at 296.897 kb on + strand, within GFF281 at 296.897 kb on + strand, within GFF281 at 296.897 kb on + strand, within GFF281 at 296.898 kb on - strand, within GFF281 at 296.898 kb on - strand, within GFF281 at 296.898 kb on - strand, within GFF281 at 297.180 kb on - strand, within GFF281 at 297.180 kb on - strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.219 kb on - strand, within GFF281 at 297.219 kb on - strand, within GFF281 at 297.338 kb on + strand, within GFF281 at 297.402 kb on - strand, within GFF281 at 297.402 kb on - strand, within GFF281 at 297.422 kb on + strand, within GFF281 at 297.422 kb on + strand, within GFF281 at 297.422 kb on + strand, within GFF281 at 297.423 kb on - strand, within GFF281 at 297.473 kb on + strand, within GFF281 at 297.473 kb on + strand, within GFF281 at 297.474 kb on - strand, within GFF281 at 297.668 kb on + strand, within GFF281 at 297.668 kb on + strand, within GFF281 at 297.668 kb on + strand, within GFF281 at 297.669 kb on - strand, within GFF281 at 297.669 kb on - strand, within GFF281 at 297.669 kb on - strand, within GFF281 at 297.669 kb on - strand, within GFF281 at 297.670 kb on + strand, within GFF281 at 297.670 kb on + strand, within GFF281 at 297.671 kb on - strand, within GFF281 at 297.671 kb on - strand, within GFF281 at 297.671 kb on - strand, within GFF281 at 297.804 kb on - strand, within GFF281 at 297.882 kb on - strand at 298.164 kb on + strand, within GFF282 at 298.164 kb on + strand, within GFF282 at 298.612 kb on - strand, within GFF282 at 298.612 kb on - strand, within GFF282 at 298.785 kb on + strand, within GFF282
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 296,210 + GFF280 0.64 +0.5 296,211 - GFF280 0.64 +0.1 296,211 - GFF280 0.64 +0.5 296,211 - GFF280 0.64 +0.6 296,213 + GFF280 0.64 +0.3 296,213 + GFF280 0.64 +0.1 296,214 - GFF280 0.64 -0.2 296,501 + -0.4 296,501 + -1.2 296,501 + +0.1 296,502 - -0.3 296,586 - +0.3 296,591 + +0.5 296,607 - +0.5 296,617 + +0.3 296,622 + +0.4 296,634 - -0.0 296,634 - +0.2 296,664 + -0.1 296,664 + +1.0 296,664 + +0.1 296,664 + +0.2 296,664 + +0.5 296,665 - +0.3 296,665 - +0.1 296,727 + -0.1 296,727 + -0.2 296,728 - -0.0 296,897 + GFF281 0.13 +1.3 296,897 + GFF281 0.13 -0.9 296,897 + GFF281 0.13 -0.0 296,898 - GFF281 0.13 -0.5 296,898 - GFF281 0.13 -0.6 296,898 - GFF281 0.13 -0.6 297,180 - GFF281 0.37 +0.1 297,180 - GFF281 0.37 -0.2 297,218 + GFF281 0.40 -0.3 297,218 + GFF281 0.40 -0.7 297,218 + GFF281 0.40 -0.6 297,218 + GFF281 0.40 -0.3 297,218 + GFF281 0.40 +0.2 297,218 + GFF281 0.40 +0.3 297,218 + GFF281 0.40 -0.2 297,218 + GFF281 0.40 +0.6 297,219 - GFF281 0.40 +0.0 297,219 - GFF281 0.40 -0.4 297,338 + GFF281 0.50 -0.1 297,402 - GFF281 0.56 -0.4 297,402 - GFF281 0.56 -0.7 297,422 + GFF281 0.57 -0.4 297,422 + GFF281 0.57 +0.4 297,422 + GFF281 0.57 -0.1 297,423 - GFF281 0.57 -0.1 297,473 + GFF281 0.62 -0.9 297,473 + GFF281 0.62 +0.7 297,474 - GFF281 0.62 +0.3 297,668 + GFF281 0.78 -0.4 297,668 + GFF281 0.78 +0.2 297,668 + GFF281 0.78 +0.3 297,669 - GFF281 0.78 +1.4 297,669 - GFF281 0.78 -0.6 297,669 - GFF281 0.78 +0.1 297,669 - GFF281 0.78 -0.2 297,670 + GFF281 0.78 -0.1 297,670 + GFF281 0.78 -0.6 297,671 - GFF281 0.78 -1.0 297,671 - GFF281 0.78 -0.3 297,671 - GFF281 0.78 +0.3 297,804 - GFF281 0.89 +0.1 297,882 - -0.4 298,164 + GFF282 0.23 -0.4 298,164 + GFF282 0.23 -0.5 298,612 - GFF282 0.67 -0.5 298,612 - GFF282 0.67 +0.5 298,785 + GFF282 0.84 +0.1
Or see this region's nucleotide sequence