Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2534

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
116,132	+		GFF2533	0.69	-1.2
116,132	+		GFF2533	0.69	-1.1
116,142	-		GFF2533	0.69	-1.1
116,276	+		GFF2533	0.74	-1.0
116,276	+		GFF2533	0.74	-1.4
116,277	-		GFF2533	0.74	+0.6
116,277	-		GFF2533	0.74	-2.7
116,277	-		GFF2533	0.74	-0.7
116,390	+		GFF2533	0.78	-1.3
116,390	+		GFF2533	0.78	-1.8
116,390	+		GFF2533	0.78	+1.5
116,390	+		GFF2533	0.78	-1.1
116,390	+		GFF2533	0.78	-0.8
116,391	-		GFF2533	0.78	+1.0
116,391	-		GFF2533	0.78	-1.3
116,391	-		GFF2533	0.78	-2.4
116,391	-		GFF2533	0.78	-0.2
116,391	-		GFF2533	0.78	-2.4
116,391	-		GFF2533	0.78	-0.4
116,391	-		GFF2533	0.78	-0.8
116,391	-		GFF2533	0.78	-0.4
116,417	+		GFF2533	0.79	-0.5
116,417	+		GFF2533	0.79	+0.3
116,417	+		GFF2533	0.79	-1.0
116,480	+		GFF2533	0.81	-0.4
116,481	-		GFF2533	0.81	-1.3
116,481	-		GFF2533	0.81	-1.3
116,487	-		GFF2533	0.82	-0.8
116,487	-		GFF2533	0.82	-0.3
116,487	-		GFF2533	0.82	-0.5
116,487	-		GFF2533	0.82	-0.8
116,487	-		GFF2533	0.82	-0.5
116,487	-		GFF2533	0.82	-0.9
116,487	-		GFF2533	0.82	-0.2
116,868	-				-0.7
117,003	+				-0.4
117,003	+				+0.0
117,003	+				-0.1
117,003	+				+0.4
117,003	+				+0.0
117,004	-				+0.3
117,004	-				+0.2
117,789	+		GFF2534	0.17	+0.7
117,789	+		GFF2534	0.17	+1.1
117,789	+		GFF2534	0.17	-0.9
117,790	-		GFF2534	0.17	-0.4
118,332	+		GFF2534	0.30	-0.0
118,332	+		GFF2534	0.30	+0.2
118,765	-		GFF2534	0.41	-1.2
118,775	+		GFF2534	0.41	+0.2
118,776	-		GFF2534	0.41	-0.0
118,800	+		GFF2534	0.41	+0.2
118,800	-		GFF2534	0.41	-0.6
118,801	-		GFF2534	0.41	-1.5
118,801	-		GFF2534	0.41	-0.4
118,944	+		GFF2534	0.45	+0.2
118,945	-		GFF2534	0.45	-0.7
118,945	-		GFF2534	0.45	+0.1
118,956	+		GFF2534	0.45	-2.8
119,439	+		GFF2534	0.57	+0.4
119,440	-		GFF2534	0.57	+0.2
119,440	-		GFF2534	0.57	-0.7
120,081	+		GFF2534	0.72	-0.4
120,082	-		GFF2534	0.72	+0.8
120,217	-		GFF2534	0.76	+0.9
120,217	-		GFF2534	0.76	+0.6
120,261	+		GFF2534	0.77	-0.1
120,261	+		GFF2534	0.77	-0.3
120,262	-		GFF2534	0.77	+0.7
120,262	-		GFF2534	0.77	+0.6
120,262	-		GFF2534	0.77	-0.3
120,262	-		GFF2534	0.77	-0.2
120,687	+		GFF2534	0.87	-0.4
121,218	+				-0.4
121,218	+				-0.3
121,218	+				-0.7
121,218	+				-0.1
121,218	+				-0.1
121,219	-				-0.8
121,219	-				-0.1
121,219	-				-0.1
121,219	-				-0.3
121,219	-				+0.5
121,371	-		GFF2535	0.15	+0.8
121,371	-		GFF2535	0.15	+0.4
121,371	-		GFF2535	0.15	+1.9
121,625	+		GFF2535	0.46	+0.7
121,625	+		GFF2535	0.46	+1.7
121,626	-		GFF2535	0.47	+0.0
121,626	-		GFF2535	0.47	+0.0
121,724	+		GFF2535	0.59	-0.3
121,748	+		GFF2535	0.62	+0.0
121,749	-		GFF2535	0.62	-0.4
121,796	+		GFF2535	0.68	+1.1
121,796	+		GFF2535	0.68	-0.2
121,797	-		GFF2535	0.68	-0.2
121,797	-		GFF2535	0.68	-1.3
121,797	-		GFF2535	0.68	+0.2