Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2397 and GFF2398 are separated by 227 nucleotides GFF2398 and GFF2399 are separated by 18 nucleotides
GFF2397 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 41,765 to 43,054
GFF2397
GFF2398 - putative exported protein, at 43,282 to 44,274
GFF2398
GFF2399 - Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A, at 44,293 to 45,474
GFF2399
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1 at 42.320 kb on - strand, within GFF2397 at 42.456 kb on + strand, within GFF2397 at 42.457 kb on - strand, within GFF2397 at 42.457 kb on - strand, within GFF2397 at 42.472 kb on - strand, within GFF2397 at 42.472 kb on - strand, within GFF2397 at 42.472 kb on - strand, within GFF2397 at 42.598 kb on - strand, within GFF2397 at 42.598 kb on - strand, within GFF2397 at 43.284 kb on - strand at 43.557 kb on - strand, within GFF2398 at 43.634 kb on + strand, within GFF2398 at 43.635 kb on - strand, within GFF2398 at 43.772 kb on + strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.773 kb on - strand, within GFF2398 at 43.799 kb on + strand, within GFF2398 at 43.799 kb on + strand, within GFF2398 at 43.800 kb on - strand, within GFF2398 at 44.010 kb on - strand, within GFF2398 at 44.010 kb on - strand, within GFF2398 at 44.384 kb on + strand at 44.447 kb on + strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.448 kb on - strand, within GFF2399 at 44.633 kb on + strand, within GFF2399 at 44.633 kb on + strand, within GFF2399 at 45.091 kb on + strand, within GFF2399
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 42,320 - GFF2397 0.43 -0.2 42,456 + GFF2397 0.54 +1.3 42,457 - GFF2397 0.54 -0.1 42,457 - GFF2397 0.54 +0.3 42,472 - GFF2397 0.55 +0.4 42,472 - GFF2397 0.55 +0.3 42,472 - GFF2397 0.55 -0.5 42,598 - GFF2397 0.65 -0.6 42,598 - GFF2397 0.65 +0.7 43,284 - -0.7 43,557 - GFF2398 0.28 +0.5 43,634 + GFF2398 0.35 -0.7 43,635 - GFF2398 0.36 +0.1 43,772 + GFF2398 0.49 +0.3 43,773 - GFF2398 0.49 +1.2 43,773 - GFF2398 0.49 +0.7 43,773 - GFF2398 0.49 -0.6 43,773 - GFF2398 0.49 +0.9 43,773 - GFF2398 0.49 +0.4 43,799 + GFF2398 0.52 +0.6 43,799 + GFF2398 0.52 +0.4 43,800 - GFF2398 0.52 -1.6 44,010 - GFF2398 0.73 +0.4 44,010 - GFF2398 0.73 -0.6 44,384 + +0.0 44,447 + GFF2399 0.13 +0.4 44,448 - GFF2399 0.13 +0.6 44,448 - GFF2399 0.13 -0.2 44,448 - GFF2399 0.13 -0.3 44,448 - GFF2399 0.13 -0.6 44,448 - GFF2399 0.13 -1.1 44,633 + GFF2399 0.29 +0.1 44,633 + GFF2399 0.29 -0.2 45,091 + GFF2399 0.68 +0.3
Or see this region's nucleotide sequence