Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF229 and GFF230 overlap by 26 nucleotides GFF230 and GFF231 are separated by 4 nucleotides GFF231 and GFF232 overlap by 4 nucleotides GFF232 and GFF233 overlap by 1 nucleotides
GFF229 - Rrf2 family transcriptional regulator, group III, at 251,288 to 251,761
GFF229
GFF230 - Thioredoxin reductase (EC 1.8.1.9), at 251,736 to 252,635
GFF230
GFF231 - probable DNA repair exonuclease, at 252,640 to 253,428
GFF231
GFF232 - Transcription regulator [contains diacylglycerol kinase catalytic domain], at 253,425 to 254,396
GFF232
GFF233 - hypothetical protein, at 254,396 to 254,944
GFF233
Position (kb) 252
253
254 Strain fitness (log2 ratio) -1
0
1 at 251.784 kb on + strand at 251.785 kb on - strand at 251.785 kb on - strand at 252.403 kb on + strand, within GFF230 at 252.854 kb on + strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 252.855 kb on - strand, within GFF231 at 253.172 kb on + strand, within GFF231 at 253.209 kb on + strand, within GFF231 at 253.948 kb on + strand, within GFF232 at 254.083 kb on + strand, within GFF232 at 254.083 kb on + strand, within GFF232 at 254.084 kb on - strand, within GFF232
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 251,784 + -0.4 251,785 - +0.1 251,785 - +0.1 252,403 + GFF230 0.74 -0.4 252,854 + GFF231 0.27 +0.3 252,855 - GFF231 0.27 +0.3 252,855 - GFF231 0.27 -1.7 252,855 - GFF231 0.27 -0.7 252,855 - GFF231 0.27 +0.0 252,855 - GFF231 0.27 +0.3 252,855 - GFF231 0.27 +0.1 252,855 - GFF231 0.27 -0.0 252,855 - GFF231 0.27 +1.4 253,172 + GFF231 0.67 +1.1 253,209 + GFF231 0.72 +0.5 253,948 + GFF232 0.54 -1.1 254,083 + GFF232 0.68 -0.6 254,083 + GFF232 0.68 +0.4 254,084 - GFF232 0.68 -0.0
Or see this region's nucleotide sequence