Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2114

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
1,001,977	+		GFF2113	0.27	+0.5
1,002,625	+				-1.4
1,002,852	+				-1.5
1,002,852	+				-0.5
1,002,852	+				+0.5
1,003,684	-				+0.1
1,003,875	+		GFF2115	0.11	+1.5
1,003,876	-		GFF2115	0.11	-0.0
1,004,011	-		GFF2115	0.24	-0.5
1,004,011	-		GFF2115	0.24	+0.4
1,004,046	+		GFF2115	0.28	+0.1
1,004,046	+		GFF2115	0.28	-0.8
1,004,047	-		GFF2115	0.28	+1.3
1,004,047	-		GFF2115	0.28	+0.2
1,004,197	-		GFF2115	0.43	+0.7
1,004,553	+		GFF2115	0.77	+0.1
1,004,553	+		GFF2115	0.77	+0.5
1,004,554	-		GFF2115	0.78	-0.5
1,004,565	+		GFF2115	0.79	-0.6
1,004,565	+		GFF2115	0.79	+0.1
1,004,565	+		GFF2115	0.79	+0.9
1,004,569	-		GFF2115	0.79	-0.8