Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2020

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2018 and GFF2019 are separated by 103 nucleotidesGFF2019 and GFF2020 are separated by 10 nucleotidesGFF2020 and GFF2021 are separated by 477 nucleotides GFF2018 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 892,824 to 894,791 GFF2018 GFF2019 - NADPH:quinone oxidoreductase, at 894,895 to 895,515 GFF2019 GFF2020 - hypothetical protein, at 895,526 to 896,221 GFF2020 GFF2021 - FIG00977539: hypothetical protein, at 896,699 to 898,087 GFF2021 Position (kb) 895 896 897Strain fitness (log2 ratio) -2 -1 0 1 2at 894.784 kb on + strandat 894.784 kb on + strandat 894.785 kb on - strandat 894.785 kb on - strandat 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.078 kb on + strand, within GFF2019at 895.079 kb on - strand, within GFF2019at 895.079 kb on - strand, within GFF2019at 895.079 kb on - strand, within GFF2019at 895.177 kb on + strand, within GFF2019at 895.177 kb on + strand, within GFF2019at 895.178 kb on - strand, within GFF2019at 895.178 kb on - strand, within GFF2019at 895.178 kb on - strand, within GFF2019at 895.178 kb on - strand, within GFF2019at 895.189 kb on + strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.190 kb on - strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.346 kb on + strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.347 kb on - strand, within GFF2019at 895.358 kb on + strand, within GFF2019at 895.359 kb on - strand, within GFF2019at 895.359 kb on - strand, within GFF2019at 895.359 kb on - strand, within GFF2019at 895.359 kb on - strand, within GFF2019at 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.516 kb on + strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.517 kb on - strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.533 kb on + strandat 895.534 kb on - strandat 895.534 kb on - strandat 895.534 kb on - strandat 895.534 kb on - strandat 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.686 kb on + strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.687 kb on - strand, within GFF2020at 895.743 kb on + strand, within GFF2020at 895.743 kb on + strand, within GFF2020at 895.743 kb on + strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.768 kb on - strand, within GFF2020at 895.828 kb on - strand, within GFF2020at 896.499 kb on - strandat 896.739 kb on + strandat 896.739 kb on + strandat 896.739 kb on + strandat 896.739 kb on + strandat 896.740 kb on - strandat 896.751 kb on - strandat 896.835 kb on + strandat 896.836 kb on - strandat 896.963 kb on + strand, within GFF2021at 896.963 kb on + strand, within GFF2021at 896.963 kb on + strand, within GFF2021at 896.964 kb on - strand, within GFF2021at 896.964 kb on - strand, within GFF2021at 897.147 kb on + strand, within GFF2021at 897.148 kb on - strand, within GFF2021at 897.148 kb on - strand, within GFF2021

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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894,784 + -1.0
894,784 + -0.9
894,785 - -0.5
894,785 - -0.7
895,078 + GFF2019 0.29 +0.1
895,078 + GFF2019 0.29 +0.6
895,078 + GFF2019 0.29 +0.1
895,078 + GFF2019 0.29 -0.2
895,078 + GFF2019 0.29 +0.9
895,078 + GFF2019 0.29 -1.3
895,079 - GFF2019 0.30 +1.1
895,079 - GFF2019 0.30 -0.0
895,079 - GFF2019 0.30 -0.6
895,177 + GFF2019 0.45 -0.9
895,177 + GFF2019 0.45 -0.4
895,178 - GFF2019 0.46 -0.1
895,178 - GFF2019 0.46 -0.0
895,178 - GFF2019 0.46 +0.2
895,178 - GFF2019 0.46 +0.3
895,189 + GFF2019 0.47 -0.4
895,190 - GFF2019 0.48 +0.6
895,190 - GFF2019 0.48 +1.1
895,190 - GFF2019 0.48 +0.5
895,190 - GFF2019 0.48 -0.2
895,190 - GFF2019 0.48 -0.0
895,190 - GFF2019 0.48 -0.3
895,190 - GFF2019 0.48 -0.2
895,190 - GFF2019 0.48 -0.6
895,190 - GFF2019 0.48 +0.2
895,190 - GFF2019 0.48 +0.5
895,346 + GFF2019 0.73 -0.0
895,346 + GFF2019 0.73 -0.6
895,346 + GFF2019 0.73 +1.2
895,346 + GFF2019 0.73 -0.0
895,346 + GFF2019 0.73 +0.5
895,346 + GFF2019 0.73 -1.6
895,346 + GFF2019 0.73 +0.4
895,346 + GFF2019 0.73 -0.0
895,346 + GFF2019 0.73 -0.0
895,346 + GFF2019 0.73 +1.2
895,347 - GFF2019 0.73 -0.4
895,347 - GFF2019 0.73 -0.5
895,347 - GFF2019 0.73 +0.2
895,347 - GFF2019 0.73 -0.2
895,347 - GFF2019 0.73 -0.5
895,347 - GFF2019 0.73 +0.2
895,347 - GFF2019 0.73 +0.5
895,347 - GFF2019 0.73 +0.5
895,347 - GFF2019 0.73 -0.7
895,347 - GFF2019 0.73 +0.5
895,358 + GFF2019 0.75 +0.5
895,359 - GFF2019 0.75 +0.1
895,359 - GFF2019 0.75 +0.2
895,359 - GFF2019 0.75 -0.0
895,359 - GFF2019 0.75 +0.1
895,516 + +0.0
895,516 + +0.5
895,516 + +0.3
895,516 + -0.2
895,516 + +0.2
895,516 + -0.2
895,516 + -0.1
895,517 - +0.8
895,517 - +0.0
895,517 - +0.2
895,517 - -0.3
895,517 - -0.1
895,517 - -0.3
895,517 - -0.7
895,517 - +0.4
895,517 - +0.2
895,517 - -0.0
895,533 + -0.1
895,533 + -0.3
895,533 + -0.6
895,533 + +2.1
895,533 + -0.8
895,533 + +0.5
895,533 + -0.2
895,534 - -0.2
895,534 - +0.9
895,534 - +0.3
895,534 - +0.5
895,686 + GFF2020 0.23 -1.9
895,686 + GFF2020 0.23 -0.5
895,686 + GFF2020 0.23 -0.2
895,686 + GFF2020 0.23 +0.1
895,686 + GFF2020 0.23 -0.0
895,686 + GFF2020 0.23 +0.6
895,687 - GFF2020 0.23 -0.1
895,687 - GFF2020 0.23 -0.9
895,687 - GFF2020 0.23 +0.4
895,687 - GFF2020 0.23 -0.1
895,687 - GFF2020 0.23 -0.0
895,687 - GFF2020 0.23 -0.9
895,687 - GFF2020 0.23 -0.5
895,687 - GFF2020 0.23 +0.7
895,743 + GFF2020 0.31 -1.0
895,743 + GFF2020 0.31 -0.1
895,743 + GFF2020 0.31 -0.5
895,744 - GFF2020 0.31 +1.0
895,744 - GFF2020 0.31 -0.0
895,744 - GFF2020 0.31 -0.8
895,744 - GFF2020 0.31 -0.6
895,744 - GFF2020 0.31 -0.3
895,744 - GFF2020 0.31 -0.2
895,744 - GFF2020 0.31 +1.0
895,744 - GFF2020 0.31 +0.6
895,744 - GFF2020 0.31 -0.7
895,744 - GFF2020 0.31 -0.1
895,744 - GFF2020 0.31 -0.4
895,744 - GFF2020 0.31 +0.7
895,744 - GFF2020 0.31 -0.0
895,744 - GFF2020 0.31 +0.2
895,744 - GFF2020 0.31 +0.2
895,744 - GFF2020 0.31 -1.4
895,744 - GFF2020 0.31 -0.3
895,768 - GFF2020 0.35 -0.2
895,828 - GFF2020 0.43 +0.2
896,499 - +0.3
896,739 + +0.6
896,739 + +0.5
896,739 + +0.0
896,739 + +0.2
896,740 - -0.1
896,751 - -0.7
896,835 + -0.2
896,836 - -1.0
896,963 + GFF2021 0.19 +1.0
896,963 + GFF2021 0.19 +0.1
896,963 + GFF2021 0.19 +0.6
896,964 - GFF2021 0.19 +1.2
896,964 - GFF2021 0.19 +0.2
897,147 + GFF2021 0.32 +0.1
897,148 - GFF2021 0.32 +0.1
897,148 - GFF2021 0.32 -0.5

Or see this region's nucleotide sequence