Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1849

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1848 and GFF1849 overlap by 4 nucleotidesGFF1849 and GFF1850 are separated by 119 nucleotidesGFF1850 and GFF1851 are separated by 129 nucleotides GFF1848 - hypothetical protein, at 710,777 to 711,970 GFF1848 GFF1849 - Conserved domain protein, at 711,967 to 712,638 GFF1849 GFF1850 - Conserved domain protein, at 712,758 to 713,435 GFF1850 GFF1851 - hypothetical protein, at 713,565 to 714,302 GFF1851 Position (kb) 711 712 713Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 711.254 kb on + strand, within GFF1848at 711.254 kb on + strand, within GFF1848at 711.254 kb on + strand, within GFF1848at 711.254 kb on + strand, within GFF1848at 711.254 kb on + strand, within GFF1848at 711.254 kb on + strand, within GFF1848at 711.254 kb on + strand, within GFF1848at 711.255 kb on - strand, within GFF1848at 711.255 kb on - strand, within GFF1848at 711.255 kb on - strand, within GFF1848at 711.255 kb on - strand, within GFF1848at 711.255 kb on - strand, within GFF1848at 711.255 kb on - strand, within GFF1848at 711.255 kb on - strand, within GFF1848at 711.255 kb on - strand, within GFF1848at 711.255 kb on - strand, within GFF1848at 711.356 kb on + strand, within GFF1848at 711.356 kb on + strand, within GFF1848at 711.356 kb on + strand, within GFF1848at 711.357 kb on - strand, within GFF1848at 711.357 kb on - strand, within GFF1848at 711.357 kb on - strand, within GFF1848at 711.357 kb on - strand, within GFF1848at 711.419 kb on + strand, within GFF1848at 711.419 kb on + strand, within GFF1848at 711.419 kb on + strand, within GFF1848at 711.419 kb on + strand, within GFF1848at 711.500 kb on + strand, within GFF1848at 711.500 kb on + strand, within GFF1848at 711.501 kb on - strand, within GFF1848at 711.513 kb on + strand, within GFF1848at 711.521 kb on + strand, within GFF1848at 711.521 kb on + strand, within GFF1848at 711.521 kb on + strand, within GFF1848at 711.521 kb on + strand, within GFF1848at 711.521 kb on + strand, within GFF1848at 711.521 kb on + strand, within GFF1848at 711.521 kb on + strand, within GFF1848at 711.521 kb on + strand, within GFF1848at 711.522 kb on - strand, within GFF1848at 711.522 kb on - strand, within GFF1848at 711.522 kb on - strand, within GFF1848at 711.522 kb on - strand, within GFF1848at 711.522 kb on - strand, within GFF1848at 712.060 kb on + strand, within GFF1849at 712.060 kb on + strand, within GFF1849at 712.060 kb on + strand, within GFF1849at 712.061 kb on - strand, within GFF1849at 712.061 kb on - strand, within GFF1849at 712.061 kb on - strand, within GFF1849at 712.061 kb on - strand, within GFF1849at 712.061 kb on - strand, within GFF1849at 712.087 kb on + strand, within GFF1849at 712.087 kb on + strand, within GFF1849at 712.088 kb on - strand, within GFF1849at 712.088 kb on - strand, within GFF1849at 712.147 kb on + strand, within GFF1849at 712.327 kb on + strand, within GFF1849at 712.462 kb on + strand, within GFF1849at 712.462 kb on + strand, within GFF1849at 712.462 kb on + strand, within GFF1849at 712.462 kb on + strand, within GFF1849at 712.463 kb on - strand, within GFF1849at 712.463 kb on - strand, within GFF1849at 712.463 kb on - strand, within GFF1849at 712.463 kb on - strand, within GFF1849at 712.463 kb on - strand, within GFF1849at 712.463 kb on - strand, within GFF1849at 712.597 kb on + strandat 712.597 kb on + strandat 712.597 kb on + strandat 712.597 kb on + strandat 712.597 kb on + strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.598 kb on - strandat 712.636 kb on + strandat 712.636 kb on + strandat 712.637 kb on - strandat 712.637 kb on - strandat 712.637 kb on - strandat 712.674 kb on + strandat 712.674 kb on + strandat 712.674 kb on + strandat 712.674 kb on + strandat 712.674 kb on + strandat 712.785 kb on + strandat 712.785 kb on + strandat 712.785 kb on + strandat 712.785 kb on - strandat 712.786 kb on - strandat 712.786 kb on - strandat 712.812 kb on + strandat 712.812 kb on + strandat 712.812 kb on + strandat 712.812 kb on + strandat 712.812 kb on + strandat 712.812 kb on + strandat 712.812 kb on + strandat 712.813 kb on - strandat 712.813 kb on - strandat 712.813 kb on - strandat 712.813 kb on - strandat 712.813 kb on - strandat 712.881 kb on + strand, within GFF1850at 712.881 kb on + strand, within GFF1850at 712.881 kb on + strand, within GFF1850at 712.881 kb on + strand, within GFF1850at 712.881 kb on + strand, within GFF1850at 712.882 kb on - strand, within GFF1850at 712.882 kb on - strand, within GFF1850at 712.882 kb on - strand, within GFF1850at 712.882 kb on - strand, within GFF1850at 712.926 kb on + strand, within GFF1850at 712.926 kb on + strand, within GFF1850at 712.927 kb on - strand, within GFF1850at 712.959 kb on + strand, within GFF1850at 712.960 kb on - strand, within GFF1850at 712.960 kb on - strand, within GFF1850at 712.960 kb on - strand, within GFF1850at 712.960 kb on - strand, within GFF1850at 712.960 kb on - strand, within GFF1850at 712.960 kb on - strand, within GFF1850at 712.965 kb on + strand, within GFF1850at 712.965 kb on + strand, within GFF1850at 712.965 kb on + strand, within GFF1850at 712.965 kb on + strand, within GFF1850at 712.966 kb on - strand, within GFF1850at 712.966 kb on - strand, within GFF1850at 712.966 kb on - strand, within GFF1850at 713.034 kb on + strand, within GFF1850at 713.034 kb on + strand, within GFF1850at 713.034 kb on + strand, within GFF1850at 713.034 kb on + strand, within GFF1850at 713.034 kb on + strand, within GFF1850at 713.034 kb on + strand, within GFF1850at 713.035 kb on - strand, within GFF1850at 713.035 kb on - strand, within GFF1850at 713.035 kb on - strand, within GFF1850at 713.035 kb on - strand, within GFF1850at 713.079 kb on + strand, within GFF1850at 713.079 kb on + strand, within GFF1850at 713.079 kb on + strand, within GFF1850at 713.079 kb on + strand, within GFF1850at 713.079 kb on + strand, within GFF1850at 713.079 kb on + strand, within GFF1850at 713.079 kb on + strand, within GFF1850at 713.080 kb on - strand, within GFF1850at 713.080 kb on - strand, within GFF1850at 713.080 kb on - strand, within GFF1850at 713.080 kb on - strand, within GFF1850at 713.080 kb on - strand, within GFF1850at 713.080 kb on - strand, within GFF1850at 713.194 kb on - strand, within GFF1850at 713.214 kb on + strand, within GFF1850at 713.214 kb on + strand, within GFF1850at 713.214 kb on + strand, within GFF1850at 713.214 kb on + strand, within GFF1850at 713.214 kb on + strand, within GFF1850at 713.214 kb on + strand, within GFF1850at 713.214 kb on + strand, within GFF1850at 713.215 kb on - strand, within GFF1850at 713.215 kb on - strand, within GFF1850at 713.215 kb on - strand, within GFF1850at 713.215 kb on - strand, within GFF1850at 713.215 kb on - strand, within GFF1850at 713.215 kb on - strand, within GFF1850at 713.223 kb on + strand, within GFF1850at 713.224 kb on - strand, within GFF1850at 713.224 kb on - strand, within GFF1850at 713.524 kb on - strandat 713.569 kb on + strandat 713.569 kb on + strandat 713.569 kb on + strandat 713.570 kb on - strandat 713.570 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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711,254 + GFF1848 0.40 -3.7
711,254 + GFF1848 0.40 -2.6
711,254 + GFF1848 0.40 -6.0
711,254 + GFF1848 0.40 -3.6
711,254 + GFF1848 0.40 -3.6
711,254 + GFF1848 0.40 -5.4
711,254 + GFF1848 0.40 -3.6
711,255 - GFF1848 0.40 -2.8
711,255 - GFF1848 0.40 -1.8
711,255 - GFF1848 0.40 -2.1
711,255 - GFF1848 0.40 -4.1
711,255 - GFF1848 0.40 -4.4
711,255 - GFF1848 0.40 -5.5
711,255 - GFF1848 0.40 -2.4
711,255 - GFF1848 0.40 -5.0
711,255 - GFF1848 0.40 -1.5
711,356 + GFF1848 0.48 -2.2
711,356 + GFF1848 0.48 -2.5
711,356 + GFF1848 0.48 -3.8
711,357 - GFF1848 0.49 -4.3
711,357 - GFF1848 0.49 -3.7
711,357 - GFF1848 0.49 -2.1
711,357 - GFF1848 0.49 -3.0
711,419 + GFF1848 0.54 -3.9
711,419 + GFF1848 0.54 -5.6
711,419 + GFF1848 0.54 -6.4
711,419 + GFF1848 0.54 -2.3
711,500 + GFF1848 0.61 -4.4
711,500 + GFF1848 0.61 -4.6
711,501 - GFF1848 0.61 -4.5
711,513 + GFF1848 0.62 -3.9
711,521 + GFF1848 0.62 -2.6
711,521 + GFF1848 0.62 -1.3
711,521 + GFF1848 0.62 -5.2
711,521 + GFF1848 0.62 -1.3
711,521 + GFF1848 0.62 -2.8
711,521 + GFF1848 0.62 -4.4
711,521 + GFF1848 0.62 -2.6
711,521 + GFF1848 0.62 -1.2
711,522 - GFF1848 0.62 -1.8
711,522 - GFF1848 0.62 -2.4
711,522 - GFF1848 0.62 -6.4
711,522 - GFF1848 0.62 -1.6
711,522 - GFF1848 0.62 -4.3
712,060 + GFF1849 0.14 +0.1
712,060 + GFF1849 0.14 -0.0
712,060 + GFF1849 0.14 -0.4
712,061 - GFF1849 0.14 -0.2
712,061 - GFF1849 0.14 +0.6
712,061 - GFF1849 0.14 -0.2
712,061 - GFF1849 0.14 -1.0
712,061 - GFF1849 0.14 +0.1
712,087 + GFF1849 0.18 +0.0
712,087 + GFF1849 0.18 -0.3
712,088 - GFF1849 0.18 +0.1
712,088 - GFF1849 0.18 -0.2
712,147 + GFF1849 0.27 -0.8
712,327 + GFF1849 0.54 +0.4
712,462 + GFF1849 0.74 +0.9
712,462 + GFF1849 0.74 -0.4
712,462 + GFF1849 0.74 -0.0
712,462 + GFF1849 0.74 +0.4
712,463 - GFF1849 0.74 +1.1
712,463 - GFF1849 0.74 +0.4
712,463 - GFF1849 0.74 +0.3
712,463 - GFF1849 0.74 -0.3
712,463 - GFF1849 0.74 -0.7
712,463 - GFF1849 0.74 -0.5
712,597 + +0.6
712,597 + +0.6
712,597 + -0.2
712,597 + -0.5
712,597 + -0.3
712,598 - -0.2
712,598 - -0.4
712,598 - -0.2
712,598 - +0.5
712,598 - +0.9
712,598 - -0.1
712,598 - +1.1
712,598 - -1.1
712,598 - -0.2
712,598 - -0.3
712,598 - -0.8
712,598 - -0.3
712,598 - -0.4
712,598 - -1.0
712,636 + -0.5
712,636 + +0.8
712,637 - -0.1
712,637 - -0.0
712,637 - -0.9
712,674 + +0.4
712,674 + -0.2
712,674 + -0.4
712,674 + +0.0
712,674 + +0.2
712,785 + -0.1
712,785 + +0.1
712,785 + -0.1
712,785 - -0.6
712,786 - +0.2
712,786 - +0.9
712,812 + -0.2
712,812 + +1.2
712,812 + +0.8
712,812 + -2.0
712,812 + +0.2
712,812 + +0.4
712,812 + +0.2
712,813 - +2.7
712,813 - -0.1
712,813 - +0.6
712,813 - +0.2
712,813 - -0.1
712,881 + GFF1850 0.18 +0.2
712,881 + GFF1850 0.18 +0.5
712,881 + GFF1850 0.18 +0.1
712,881 + GFF1850 0.18 -0.3
712,881 + GFF1850 0.18 +0.3
712,882 - GFF1850 0.18 -0.1
712,882 - GFF1850 0.18 -0.4
712,882 - GFF1850 0.18 -0.4
712,882 - GFF1850 0.18 +0.5
712,926 + GFF1850 0.25 +0.3
712,926 + GFF1850 0.25 -0.2
712,927 - GFF1850 0.25 -0.1
712,959 + GFF1850 0.30 -0.6
712,960 - GFF1850 0.30 -0.2
712,960 - GFF1850 0.30 +0.2
712,960 - GFF1850 0.30 -0.2
712,960 - GFF1850 0.30 -0.1
712,960 - GFF1850 0.30 +0.0
712,960 - GFF1850 0.30 -0.0
712,965 + GFF1850 0.31 -0.5
712,965 + GFF1850 0.31 -0.0
712,965 + GFF1850 0.31 +0.5
712,965 + GFF1850 0.31 +0.0
712,966 - GFF1850 0.31 +0.1
712,966 - GFF1850 0.31 -0.2
712,966 - GFF1850 0.31 +0.6
713,034 + GFF1850 0.41 +0.1
713,034 + GFF1850 0.41 -0.6
713,034 + GFF1850 0.41 +0.2
713,034 + GFF1850 0.41 -1.6
713,034 + GFF1850 0.41 -0.3
713,034 + GFF1850 0.41 +0.8
713,035 - GFF1850 0.41 +0.4
713,035 - GFF1850 0.41 +0.2
713,035 - GFF1850 0.41 -0.0
713,035 - GFF1850 0.41 -0.0
713,079 + GFF1850 0.47 +0.8
713,079 + GFF1850 0.47 +0.2
713,079 + GFF1850 0.47 +0.2
713,079 + GFF1850 0.47 +0.2
713,079 + GFF1850 0.47 +0.2
713,079 + GFF1850 0.47 -0.8
713,079 + GFF1850 0.47 +0.5
713,080 - GFF1850 0.47 +0.5
713,080 - GFF1850 0.47 -0.1
713,080 - GFF1850 0.47 -0.6
713,080 - GFF1850 0.47 -0.6
713,080 - GFF1850 0.47 +0.3
713,080 - GFF1850 0.47 -0.6
713,194 - GFF1850 0.64 +0.5
713,214 + GFF1850 0.67 +1.1
713,214 + GFF1850 0.67 -0.1
713,214 + GFF1850 0.67 -0.5
713,214 + GFF1850 0.67 +0.1
713,214 + GFF1850 0.67 +0.7
713,214 + GFF1850 0.67 -0.3
713,214 + GFF1850 0.67 +0.5
713,215 - GFF1850 0.67 -0.2
713,215 - GFF1850 0.67 +0.1
713,215 - GFF1850 0.67 -0.1
713,215 - GFF1850 0.67 +0.0
713,215 - GFF1850 0.67 +0.1
713,215 - GFF1850 0.67 -0.3
713,223 + GFF1850 0.69 -0.0
713,224 - GFF1850 0.69 +0.1
713,224 - GFF1850 0.69 +0.2
713,524 - -2.5
713,569 + -5.5
713,569 + -1.6
713,569 + -5.1
713,570 - -3.4
713,570 - -3.4

Or see this region's nucleotide sequence